C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000052841 TTC17 9606 + 11:43358932-43494933 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000039989 TTC17-001 43358941-43494933 protein_coding
  ENST00000299240 TTC17-015 43358932-43446719 protein_coding
  ENST00000418561 TTC17-014 43451180-43493961 protein_coding
  ENST00000524936 TTC17-009 43396997-43398058 retained_intron
  ENST00000525029 TTC17-005 43398033-43401622 non_stop_decay
  ENST00000525135 TTC17-007 43447584-43492164 retained_intron
  ENST00000525543 TTC17-006 43448603-43494927 retained_intron
  ENST00000526774 TTC17-002 43396136-43446544 processed_transcript
  ENST00000529140 TTC17-012 43489797-43494083 retained_intron
  ENST00000530469 TTC17-003 43379258-43391788 retained_intron
  ENST00000530483 TTC17-010 43404052-43405876 retained_intron
  ENST00000533072 TTC17-013 43490718-43494933 retained_intron
  ENST00000533554 TTC17-011 43450138-43468363 processed_transcript
  ENST00000534347 TTC17-004 43358954-43391870 nonsense_mediated_decay
  ENST00000534417 TTC17-008 43436222-43444505 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000039989ENST00000299240ENST00000526774ENST00000534417
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000039989 4.397±0.00 7.877±0.00 N/A 2.081±0.12 4.137±0.76 2.840±0.00 N/A N/A 3.198±0.00 3.305±1.20 4.309±0.00 4.380±3.16 3.703±0.00 3.381±0.00
ENST00000299240 1.836±0.00 N/A N/A 2.112±0.76 2.703±0.00 1.409±0.00 0.665±0.00 7.181±0.00 4.578±2.03 4.263±1.34 1.868±0.58 3.933±0.40 3.989±0.39 10.517±5.18
ENST00000526774 1.564±0.00 4.920±0.00 2.021±0.00 1.577±0.00 N/A 4.030±0.00 1.240±0.00 N/A 3.693±0.00 N/A N/A 3.185±0.00 N/A N/A
ENST00000534417 N/A N/A 6.357±0.00 N/A N/A N/A N/A 12.449±0.00 N/A 10.985±0.00 2.736±0.00 8.351±0.00 13.006±0.00 19.766±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0015629 IDA actin cytoskeleton
GO:0030041 IMP actin filament polymerization
GO:0044782 IMP cilium organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044812 TTC17 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000027194 Ttc17 tetratricopeptide repeat domain 17 protein_coding Mus_musculus

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