C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: galactosylceramidase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000054983 GALC 9606 - 14:87837820-87993665 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261304 GALC-001 87933014-87993271 protein_coding
  ENST00000393568 GALC-005 87934681-87993178 protein_coding
  ENST00000393569 GALC-002 87934331-87993665 protein_coding
  ENST00000474294 GALC-003 87963272-87993154 retained_intron
  ENST00000477716 GALC-013 87968393-87976864 retained_intron
  ENST00000544807 GALC-007 87933723-87992838 protein_coding
  ENST00000554372 GALC-009 87982205-87993172 nonsense_mediated_decay
  ENST00000554916 GALC-011 87976358-87989647 processed_transcript
  ENST00000555000 GALC-008 87837820-87980648 nonsense_mediated_decay
  ENST00000555179 GALC-014 87934772-87949899 nonsense_mediated_decay
  ENST00000555956 GALC-015 87987752-87988523 retained_intron
  ENST00000556261 GALC-012 87981203-87988172 processed_transcript
  ENST00000556879 GALC-010 87984441-87993122 nonsense_mediated_decay
  ENST00000557316 GALC-006 87941395-87993170 nonsense_mediated_decay
  ENST00000557520 GALC-016 87959553-87965623 processed_transcript
  ENST00000622264 GALC-017 87963314-87993154 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261304ENST00000393568ENST00000393569ENST00000554916ENST00000555179ENST00000557316
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261304 5.451±0.00 1.871±0.00 1.943±0.00 9.114±4.79 2.901±0.47 2.336±1.35 3.183±2.05 6.645±0.00 1.555±0.05 7.090±2.43 0.860±0.00 3.636±1.43 4.452±1.48 3.868±0.00
ENST00000393568 N/A N/A N/A 1.951±0.00 2.280±0.00 0.875±0.00 N/A N/A 1.178±0.00 N/A N/A N/A N/A N/A
ENST00000393569 N/A N/A 0.944±0.00 N/A N/A N/A N/A N/A 0.702±0.00 N/A 1.539±0.00 1.835±0.00 N/A 1.910±0.00
ENST00000554916 N/A N/A N/A N/A N/A N/A 4.207±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000555179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.436±0.00 N/A N/A N/A
ENST00000557316 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.564±0.00 0.423±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JI CIL_0002JI_0001 CGP 14:85530144-87993665
CIL_0004KM CIL_0004KM_0001 CGP 14:87837820-88014811

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004336 IEA galactosylceramidase activity
GO:0005739 IEA mitochondrion
GO:0005764 TAS lysosome
GO:0005975 IEA carbohydrate metabolic process
GO:0006665 TAS sphingolipid metabolic process
GO:0006683 IEA galactosylceramide catabolic process
GO:0006687 TAS glycosphingolipid metabolic process
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016474 galcb galactosylceramidase b protein_coding Danio_rerio
ENSDARG00000037064 galca galactosylceramidase a protein_coding Danio_rerio
ENSMUSG00000021003 Galc galactosylceramidase protein_coding Mus_musculus

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