C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PR domain containing 1, with ZNF domain
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000057657 PRDM1 9606 + 6:106086320-106109939 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369089 PRDM1-002 106098940-106109939 protein_coding
  ENST00000369091 PRDM1-004 106086320-106107508 protein_coding
  ENST00000369096 PRDM1-001 106086320-106109938 protein_coding
  ENST00000424894 PRDM1-006 106087580-106095620 protein_coding
  ENST00000450060 PRDM1-007 106098606-106105038 protein_coding
  ENST00000481163 PRDM1-003 106098925-106099709 retained_intron
  ENST00000489365 PRDM1-005 106088354-106096167 retained_intron
  ENST00000613999 PRDM1-201 106086386-106109090 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369089ENST00000369091ENST00000369096ENST00000424894ENST00000481163ENST00000489365ENST00000613999
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369089 1.302±0.00 N/A 0.052±0.00 0.335±0.00 N/A 0.151±0.00 0.216±0.00 0.344±0.00 1.836±0.00 N/A 0.566±0.26 1.017±0.00 0.280±0.00
ENST00000369091 N/A N/A 0.203±0.00 N/A 0.472±0.00 N/A N/A 0.195±0.00 6.360±0.00 0.485±0.00 N/A 1.272±0.00 0.449±0.15
ENST00000369096 3.046±0.00 1.542±0.00 N/A 1.690±0.64 1.122±0.83 0.231±0.04 N/A 1.098±0.00 2.142±0.00 0.216±0.00 1.779±1.53 1.667±1.31 0.403±0.00
ENST00000424894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.228±0.00
ENST00000481163 N/A N/A N/A N/A N/A 0.465±0.00 N/A N/A N/A 1.815±0.00 N/A N/A N/A
ENST00000489365 N/A N/A 0.928±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613999 N/A N/A 0.142±0.00 0.882±0.00 N/A N/A 0.110±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IEA in utero embryonic development
GO:0001892 IEA embryonic placenta development
GO:0001893 IEA maternal placenta development
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007281 IEA germ cell development
GO:0008168 IEA methyltransferase activity
GO:0009791 IEA post-embryonic development
GO:0010628 IEA positive regulation of gene expression
GO:0010629 IEA negative regulation of gene expression
GO:0030889 IEA negative regulation of B cell proliferation
GO:0031665 IEA negative regulation of lipopolysaccharide-mediated signaling pathway
GO:0032259 IEA methylation
GO:0042462 IEA eye photoreceptor cell development
GO:0042826 IEA histone deacetylase binding
GO:0043565 IEA sequence-specific DNA binding
GO:0045165 IEA cell fate commitment
GO:0045579 IEA positive regulation of B cell differentiation
GO:0046872 IEA metal ion binding
GO:0060576 IEA intestinal epithelial cell development
GO:0060707 IEA trophoblast giant cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002445 prdm1a PR domain containing 1a, with ZNF domain protein_coding Danio_rerio
ENSMUSG00000038151 Prdm1 PR domain containing 1, with ZNF domain protein_coding Mus_musculus

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