C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 1, with ZNF domain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369096 PRDM1-001 ENSG00000057657 9606 + 6:106086320-106109938 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000369096
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000369096 3.046±0.00 1.542±0.00 1.690±0.64 1.122±0.83 0.231±0.04 1.098±0.00 2.142±0.00 0.216±0.00 1.779±1.53 1.667±1.31 0.403±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IEA in utero embryonic development
GO:0001892 IEA embryonic placenta development
GO:0001893 IEA maternal placenta development
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007281 IEA germ cell development
GO:0008168 IEA methyltransferase activity
GO:0009791 IEA post-embryonic development
GO:0010628 IEA positive regulation of gene expression
GO:0010629 IEA negative regulation of gene expression
GO:0030889 IEA negative regulation of B cell proliferation
GO:0031665 IEA negative regulation of lipopolysaccharide-mediated signaling pathway
GO:0032259 IEA methylation
GO:0042462 IEA eye photoreceptor cell development
GO:0042826 IEA histone deacetylase binding
GO:0043565 IEA sequence-specific DNA binding
GO:0045165 IEA cell fate commitment
GO:0045579 IEA positive regulation of B cell differentiation
GO:0046872 IEA metal ion binding
GO:0060576 IEA intestinal epithelial cell development
GO:0060707 IEA trophoblast giant cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105490 Prdm1-002 protein_coding Mus_musculus 0 3491
ENSMUST00000039174 Prdm1-001 protein_coding Mus_musculus 0 3269
ENSMUST00000167340 Prdm1-003 processed_transcript Mus_musculus 0 765
ENSDART00000017445 prdm1a-001 protein_coding Danio_rerio 0 355

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