C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000064313 TAF2 9606 - 8:119730775-119832863 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000378164 TAF2-001 119730775-119832863 protein_coding
  ENST00000519355 TAF2-006 119746866-119767128 processed_transcript
  ENST00000521007 TAF2-002 119803961-119832834 nonsense_mediated_decay
  ENST00000523078 TAF2-005 119756056-119762908 retained_intron
  ENST00000523098 TAF2-007 119760455-119762534 nonsense_mediated_decay
  ENST00000523734 TAF2-004 119789679-119791874 retained_intron
  ENST00000523904 TAF2-003 119788354-119797830 protein_coding
  ENST00000526969 TAF2-009 119732062-119744586 retained_intron
  ENST00000529653 TAF2-008 119731815-119760668 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378164ENST00000523904ENST00000526969
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378164 2.164±0.00 2.136±0.00 N/A 1.483±0.40 2.215±1.36 2.130±0.62 1.461±0.15 0.968±0.26 2.291±1.22 1.666±0.00 0.704±0.00 2.982±0.73 2.246±0.99 4.244±0.00
ENST00000523904 N/A N/A 3.294±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526969 N/A N/A 8.820±0.00 N/A N/A N/A N/A 9.364±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002T6 CIL_0002T6_0001 CGP 8:119557086-119832863
CIL_0002T2 CIL_0002T2_0001 CGP 8:119730775-119856010

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 IMP G2/M transition of mitotic cell cycle
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005669 IDA transcription factor TFIID complex
GO:0006367 IDA transcription initiation from RNA polymerase II promoter
GO:0006508 IEA proteolysis
GO:0008237 IEA metallopeptidase activity
GO:0008270 IEA zinc ion binding
GO:0014070 IEA response to organic cyclic compound
GO:0033276 IDA transcription factor TFTC complex
GO:0044212 IMP transcription regulatory region DNA binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078045 taf2 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSMUSG00000037343 Taf2 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Mus_musculus

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