C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378164 TAF2-001 ENSG00000064313 9606 - 8:119730775-119832863 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378164
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378164 2.164±0.00 2.136±0.00 1.483±0.40 2.215±1.36 2.130±0.62 1.461±0.15 0.968±0.26 2.291±1.22 1.666±0.00 0.704±0.00 2.982±0.73 2.246±0.99 4.244±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002T6 CIL_0002T6_0001 CGP 8:119557086-119832863
CIL_0002T2 CIL_0002T2_0001 CGP 8:119730775-119856010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 IMP G2/M transition of mitotic cell cycle
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005669 IDA transcription factor TFIID complex
GO:0006367 IDA transcription initiation from RNA polymerase II promoter
GO:0006508 IEA proteolysis
GO:0008237 IEA metallopeptidase activity
GO:0008270 IEA zinc ion binding
GO:0014070 IEA response to organic cyclic compound
GO:0033276 IDA transcription factor TFTC complex
GO:0044212 IMP transcription regulatory region DNA binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041733 Taf2-201 protein_coding Mus_musculus 0 4405
ENSDART00000056072 taf2-201 protein_coding Danio_rerio 0 1596
ENSDART00000157301 taf2-001 protein_coding Danio_rerio 0 1585
ENSDART00000112343 taf2-202 protein_coding Danio_rerio 0 1572

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