C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PMS1 postmeiotic segregation increased 1 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000064933 PMS1 9606 + 2:189784085-189877629 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342075 PMS1-005 189784489-189877627 nonsense_mediated_decay
  ENST00000374826 PMS1-007 189784508-189806846 protein_coding
  ENST00000409593 PMS1-011 189818127-189877436 protein_coding
  ENST00000409823 PMS1-003 189784501-189877436 protein_coding
  ENST00000409985 PMS1-004 189784450-189807054 protein_coding
  ENST00000418224 PMS1-201 189784085-189877628 protein_coding
  ENST00000420421 PMS1-015 189791700-189795857 protein_coding
  ENST00000421722 PMS1-012 189784528-189864114 processed_transcript
  ENST00000424059 PMS1-009 189791810-189873528 processed_transcript
  ENST00000424307 PMS1-006 189791790-189864202 protein_coding
  ENST00000424766 PMS1-014 189784543-189818181 protein_coding
  ENST00000432292 PMS1-202 189784085-189877628 protein_coding
  ENST00000441310 PMS1-001 189784381-189877629 protein_coding
  ENST00000446877 PMS1-013 189784489-189791941 protein_coding
  ENST00000447232 PMS1-010 189784544-189877629 protein_coding
  ENST00000447734 PMS1-008 189784565-189852762 nonsense_mediated_decay
  ENST00000450931 PMS1-002 189784513-189877627 nonsense_mediated_decay
  ENST00000452382 PMS1-016 189857402-189873656 protein_coding
  ENST00000483293 PMS1-017 189857360-189867929 processed_transcript
  ENST00000618056 PMS1-203 189784085-189877628 protein_coding
  ENST00000624204 PMS1-204 189784085-189877628 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342075ENST00000409823ENST00000418224ENST00000424059ENST00000424307ENST00000432292ENST00000441310ENST00000447232ENST00000452382ENST00000624204
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342075 N/A 1.035±0.00 N/A N/A N/A N/A N/A N/A N/A 2.580±0.00 N/A 3.300±0.00
ENST00000409823 N/A 1.896±0.00 N/A N/A N/A N/A 0.817±0.00 N/A N/A N/A N/A N/A
ENST00000418224 N/A N/A N/A N/A 0.554±0.00 N/A N/A N/A N/A 5.092±0.00 N/A 5.178±0.00
ENST00000424059 N/A N/A N/A 1.492±0.00 N/A N/A N/A N/A N/A N/A 2.182±0.00 N/A
ENST00000424307 N/A N/A N/A N/A N/A N/A N/A N/A 0.988±0.00 N/A N/A N/A
ENST00000432292 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.074±0.00 N/A N/A
ENST00000441310 1.090±0.00 1.166±0.00 2.201±0.04 1.398±0.14 1.129±0.00 N/A 0.759±0.11 N/A 0.503±0.19 3.188±0.42 N/A N/A
ENST00000447232 N/A N/A N/A N/A N/A 0.684±0.00 N/A 1.501±0.00 N/A 1.925±0.00 N/A N/A
ENST00000452382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.169±0.37
ENST00000624204 0.848±0.00 N/A N/A N/A N/A N/A N/A 1.355±0.00 N/A 1.293±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003697 IBA single-stranded DNA binding
GO:0005524 IEA ATP binding
GO:0005634 TAS nucleus
GO:0006200 IBA ATP catabolic process
GO:0006298 IBA:IEA mismatch repair
GO:0016887 IBA ATPase activity
GO:0030983 IEA mismatched DNA binding
GO:0032389 IBA MutLalpha complex
GO:0042493 IEA response to drug

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000476 pms1 PMS1 postmeiotic segregation increased 1 (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000026098 Pms1 postmeiotic segregation increased 1 (S. cerevisiae) protein_coding Mus_musculus

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