C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: WD repeat domain 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000065268 WDR18 9606 + 19:984271-998438 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000251289 WDR18-011 984358-994556 protein_coding
  ENST00000585809 WDR18-001 984271-994570 protein_coding
  ENST00000586317 WDR18-010 984341-990258 retained_intron
  ENST00000587001 WDR18-004 984332-994557 protein_coding
  ENST00000590354 WDR18-006 991134-994557 nonsense_mediated_decay
  ENST00000590397 WDR18-005 984345-991286 nonsense_mediated_decay
  ENST00000591155 WDR18-009 994014-994554 retained_intron
  ENST00000591276 WDR18-007 990647-991334 retained_intron
  ENST00000591985 WDR18-002 984358-994554 nonsense_mediated_decay
  ENST00000591997 WDR18-003 984378-998438 protein_coding
  ENST00000607440 WDR18-008 984358-994557 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000251289ENST00000585809ENST00000587001ENST00000590354ENST00000591155ENST00000591276ENST00000591985ENST00000591997ENST00000607440
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000251289 N/A N/A N/A N/A 1.796±0.00 N/A N/A 4.995±0.00 7.212±0.00 0.676±0.00 N/A 6.200±0.00 N/A 3.250±0.00
ENST00000585809 2.333±0.00 7.585±0.00 N/A 2.254±0.00 2.406±1.56 N/A N/A 2.960±0.00 N/A 1.260±0.00 4.151±0.00 16.662±4.50 25.105±15.53 12.113±0.00
ENST00000587001 2.676±0.00 4.321±0.00 N/A 5.012±0.00 1.948±0.00 1.644±0.00 1.869±0.00 N/A N/A 0.433±0.00 N/A 3.176±0.00 4.757±0.00 9.776±0.00
ENST00000590354 3.113±0.00 15.066±0.00 N/A 7.617±0.00 8.693±0.00 7.313±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591155 N/A N/A N/A 1.178±0.00 N/A N/A N/A N/A N/A N/A N/A 6.321±5.43 N/A N/A
ENST00000591276 N/A N/A 1.228±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591985 2.603±0.00 8.331±0.00 N/A N/A 2.805±2.08 3.195±2.99 1.919±0.00 7.469±0.00 1.135±0.00 1.598±0.00 11.692±0.00 N/A 5.542±0.88 7.757±0.00
ENST00000591997 N/A N/A N/A 0.399±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607440 1.414±0.00 N/A 0.444±0.00 0.246±0.00 N/A 0.230±0.00 2.234±0.00 0.708±0.00 6.653±0.00 1.305±1.00 0.151±0.00 N/A 6.759±0.00 3.715±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0004VT CIL_0004VT_0001 CGP 19:925781-998438
CIL_0005ZM CIL_0005ZM_0002 CGP 19:984271-1009732

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007275 IEA multicellular organismal development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041113 wdr18 WD repeat domain 18 protein_coding Danio_rerio
ENSMUSG00000035754 Wdr18 WD repeat domain 18 protein_coding Mus_musculus

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