C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004VT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000116017-ENSG00000065268 CGP 9606 19:925781-998438
GeneTranscriptPositionBiotype
ENSG00000065268 (WDR18)
WD repeat domain 18 		ENST00000251289 (WDR18-011) 984358-994556 protein_coding
ENST00000585809 (WDR18-001) 984271-994570 protein_coding
ENST00000586317 (WDR18-010) 984341-990258 retained_intron
ENST00000587001 (WDR18-004) 984332-994557 protein_coding
ENST00000590354 (WDR18-006) 991134-994557 nonsense_mediated_decay
ENST00000590397 (WDR18-005) 984345-991286 nonsense_mediated_decay
ENST00000591155 (WDR18-009) 994014-994554 retained_intron
ENST00000591276 (WDR18-007) 990647-991334 retained_intron
ENST00000591985 (WDR18-002) 984358-994554 nonsense_mediated_decay
ENST00000591997 (WDR18-003) 984378-998438 protein_coding
ENST00000607440 (WDR18-008) 984358-994557 protein_coding
ENSG00000116017 (ARID3A)
AT rich interactive domain 3A (BRIGHT-like) 		ENST00000263620 (ARID3A-001) 926037-975934 protein_coding
ENST00000457152 (ARID3A-003) 932565-964366 nonsense_mediated_decay
ENST00000585733 (ARID3A-007) 964289-965270 retained_intron
ENST00000585895 (ARID3A-002) 925781-929498 processed_transcript
ENST00000587532 (ARID3A-005) 932509-972055 protein_coding
ENST00000590749 (ARID3A-006) 966787-968795 retained_intron
ENST00000592216 (ARID3A-004) 928678-929357 processed_transcript
ENSG00000275162 (LLNLR-260G6.1)
 ENST00000613285 (LLNLR-260G6.1-001) 956485-958149 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0004VT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000019564-ENSMUSG00000035754 CGP 10090 10:79927043-79969246
GeneTranscriptPositionBiotype
ENSMUSG00000019564 (Arid3a)
AT rich interactive domain 3A (BRIGHT-like) 		ENSMUST00000019708 (Arid3a-001) 79927043-79955018 protein_coding
ENSMUST00000105376 (Arid3a-003) 79927341-79954703 protein_coding
ENSMUST00000105377 (Arid3a-002) 79927139-79954711 protein_coding
ENSMUST00000131118 (Arid3a-005) 79930424-79931218 protein_coding
ENSMUST00000135005 (Arid3a-004) 79946279-79952643 processed_transcript
ENSMUSG00000035754 (Wdr18)
WD repeat domain 18 		ENSMUST00000045247 (Wdr18-201) 79960152-79969246 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004VT_0001ENSG00000065268ENST00000251289ENST00000585809ENST00000586317ENST00000587001ENST00000590354ENST00000590397ENST00000591155ENST00000591276ENST00000591985ENST00000591997ENST00000607440ENSG00000116017ENST00000263620ENST00000457152ENST00000585733ENST00000585895ENST00000587532ENST00000590749ENST00000592216ENSG00000275162ENST00000613285CIL_0004VT_0002ENSMUSG00000019564ENSMUST00000019708ENSMUST00000105376ENSMUST00000105377ENSMUST00000131118ENSMUST00000135005ENSMUSG00000035754ENSMUST00000045247
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004VT_0001ENSG00000065268ENST00000251289ENST00000585809ENST00000587001ENST00000590354ENST00000591155ENST00000591276ENST00000591985ENST00000591997ENST00000607440ENSG00000116017ENST00000263620ENST00000585733ENST00000587532ENSG00000275162ENST00000613285CIL_0004VT_0002ENSMUSG00000019564ENSMUST00000019708ENSMUST00000105376ENSMUST00000105377ENSMUST00000131118ENSMUST00000135005ENSMUSG00000035754ENSMUST00000045247
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000065268 ENST00000251289 N/A N/A N/A N/A 1.796±0.00 N/A N/A 4.995±0.00 7.212±0.00 0.676±0.00 N/A 6.200±0.00 N/A 3.250±0.00
ENST00000585809 2.333±0.00 7.585±0.00 N/A 2.254±0.00 2.406±1.56 N/A N/A 2.960±0.00 N/A 1.260±0.00 4.151±0.00 16.662±4.50 25.105±15.53 12.113±0.00
ENST00000586317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587001 2.676±0.00 4.321±0.00 N/A 5.012±0.00 1.948±0.00 1.644±0.00 1.869±0.00 N/A N/A 0.433±0.00 N/A 3.176±0.00 4.757±0.00 9.776±0.00
ENST00000590354 3.113±0.00 15.066±0.00 N/A 7.617±0.00 8.693±0.00 7.313±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591155 N/A N/A N/A 1.178±0.00 N/A N/A N/A N/A N/A N/A N/A 6.321±5.43 N/A N/A
ENST00000591276 N/A N/A 1.228±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591985 2.603±0.00 8.331±0.00 N/A N/A 2.805±2.08 3.195±2.99 1.919±0.00 7.469±0.00 1.135±0.00 1.598±0.00 11.692±0.00 N/A 5.542±0.88 7.757±0.00
ENST00000591997 N/A N/A N/A 0.399±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607440 1.414±0.00 N/A 0.444±0.00 0.246±0.00 N/A 0.230±0.00 2.234±0.00 0.708±0.00 6.653±0.00 1.305±1.00 0.151±0.00 N/A 6.759±0.00 3.715±0.00
ENSG00000116017 ENST00000263620 1.874±0.00 0.772±0.00 0.103±0.00 0.147±0.02 1.149±0.30 0.715±0.35 0.225±0.00 0.596±0.55 0.446±0.00 0.748±0.39 0.562±0.00 4.939±5.22 14.213±4.21 2.236±0.62
ENST00000457152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585733 N/A N/A N/A 0.645±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587532 N/A N/A N/A 0.213±0.00 N/A N/A 0.548±0.00 N/A N/A N/A N/A N/A N/A 11.587±3.47
ENST00000590749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000275162 ENST00000613285 0.502±0.00 0.137±0.00 N/A 0.432±0.00 0.382±0.00 1.245±0.00 0.223±0.00 0.127±0.00 N/A 0.247±0.00 N/A 0.244±0.02 N/A 0.211±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019564 ENSMUST00000019708 0.560±0.06 1.297±0.57 0.614±0.14 1.154±0.14 1.817±0.77 1.049±0.28 0.283±0.09 1.009±0.20 2.082±1.25 1.210±0.19 0.458±0.05 1.264±0.52 10.235±6.70 N/A
ENSMUST00000105376 1.252±0.57 1.140±0.15 0.784±0.04 1.180±0.23 1.802±0.66 1.653±0.18 0.272±0.10 1.251±0.23 1.898±1.60 1.599±0.27 0.280±0.14 1.681±0.63 12.287±6.30 4.409±0.00
ENSMUST00000105377 0.158±0.00 0.624±0.12 N/A 0.178±0.00 N/A N/A 0.268±0.00 N/A 0.074±0.01 N/A N/A 0.831±0.08 4.833±0.00 N/A
ENSMUST00000131118 N/A 2.603±0.66 N/A N/A N/A N/A N/A N/A 0.395±0.08 N/A N/A 3.026±0.11 N/A 12.382±1.53
ENSMUST00000135005 0.406±0.00 1.139±0.23 N/A N/A 2.284±0.44 1.661±0.40 0.292±0.00 1.292±0.30 0.299±0.11 1.736±0.50 N/A 2.168±0.56 N/A 7.358±1.40
ENSMUSG00000035754 ENSMUST00000045247 11.420±4.81 23.695±7.90 6.160±0.84 10.895±4.37 9.976±2.64 13.400±4.70 8.630±2.88 18.609±4.49 12.009±5.61 8.448±1.46 6.767±0.98 20.986±9.77 8.603±6.69 8.205±5.04

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