C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005ZM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000041113-ENSDARG00000074647 CGP 7955 11:13827675-14305976
GeneTranscriptPositionBiotype
ENSDARG00000041113 (wdr18)
WD repeat domain 18 		ENSDART00000060251 (wdr18-001) 13827675-13974969 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005ZM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000065268-ENSG00000116032 CGP 9606 19:984271-1009732
GeneTranscriptPositionBiotype
ENSG00000065268 (WDR18)
WD repeat domain 18 		ENST00000251289 (WDR18-011) 984358-994556 protein_coding
ENST00000585809 (WDR18-001) 984271-994570 protein_coding
ENST00000586317 (WDR18-010) 984341-990258 retained_intron
ENST00000587001 (WDR18-004) 984332-994557 protein_coding
ENST00000590354 (WDR18-006) 991134-994557 nonsense_mediated_decay
ENST00000590397 (WDR18-005) 984345-991286 nonsense_mediated_decay
ENST00000591155 (WDR18-009) 994014-994554 retained_intron
ENST00000591276 (WDR18-007) 990647-991334 retained_intron
ENST00000591985 (WDR18-002) 984358-994554 nonsense_mediated_decay
ENST00000591997 (WDR18-003) 984378-998438 protein_coding
ENST00000607440 (WDR18-008) 984358-994557 protein_coding
ENSG00000182087 (TMEM259)
transmembrane protein 259 		ENST00000333175 (TMEM259-002) 1009651-1021115 protein_coding
ENST00000356663 (TMEM259-001) 1009648-1021179 protein_coding
ENST00000586250 (TMEM259-007) 1012113-1014304 protein_coding
ENST00000586285 (TMEM259-014) 1010695-1011992 protein_coding
ENST00000586704 (TMEM259-009) 1009653-1020851 retained_intron
ENST00000589055 (TMEM259-013) 1011866-1014247 retained_intron
ENST00000589831 (TMEM259-010) 1012541-1013639 retained_intron
ENST00000592052 (TMEM259-011) 1009720-1011356 retained_intron
ENST00000592590 (TMEM259-008) 1009650-1017420 protein_coding
ENST00000592618 (TMEM259-012) 1009652-1012289 retained_intron
ENST00000593068 (TMEM259-003) 1009648-1013242 nonsense_mediated_decay
ENST00000607316 (TMEM259-005) 1011852-1013342 retained_intron
ENSG00000266990 (LLNLR-284B4.2)
 ENST00000588380 (LLNLR-284B4.2-001) 999796-1002757 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0005ZM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035754-ENSMUSG00000035745 CGP 10090 10:79960152-79977190
GeneTranscriptPositionBiotype
ENSMUSG00000013858 (Tmem259)
transmembrane protein 259 		ENSMUST00000052885 (Tmem259-001) 79977118-79984330 protein_coding
ENSMUST00000124536 (Tmem259-002) 79977358-79984040 protein_coding
ENSMUST00000124889 (Tmem259-005) 79977963-79978776 retained_intron
ENSMUST00000126383 (Tmem259-003) 79975890-79978940 retained_intron
ENSMUST00000132080 (Tmem259-004) 79974948-79978773 retained_intron
ENSMUSG00000035754 (Wdr18)
WD repeat domain 18 		ENSMUST00000045247 (Wdr18-201) 79960152-79969246 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ZM_0001ENSDARG00000041113ENSDART00000060251CIL_0005ZM_0002ENSG00000065268ENST00000251289ENST00000585809ENST00000586317ENST00000587001ENST00000590354ENST00000590397ENST00000591155ENST00000591276ENST00000591985ENST00000591997ENST00000607440ENSG00000182087ENST00000333175ENST00000356663ENST00000586250ENST00000586285ENST00000586704ENST00000589055ENST00000589831ENST00000592052ENST00000592590ENST00000592618ENST00000593068ENST00000607316ENSG00000266990ENST00000588380CIL_0005ZM_0003ENSMUSG00000013858ENSMUST00000052885ENSMUST00000124536ENSMUST00000124889ENSMUST00000126383ENSMUST00000132080ENSMUSG00000035754ENSMUST00000045247
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ZM_0001ENSDARG00000041113ENSDART00000060251CIL_0005ZM_0002ENSG00000065268ENST00000251289ENST00000585809ENST00000587001ENST00000590354ENST00000591155ENST00000591276ENST00000591985ENST00000591997ENST00000607440ENSG00000182087ENST00000333175ENST00000356663ENST00000586285ENST00000586704ENST00000592052ENST00000592590ENST00000593068ENSG00000266990ENST00000588380CIL_0005ZM_0003ENSMUSG00000013858ENSMUST00000052885ENSMUST00000124536ENSMUSG00000035754ENSMUST00000045247
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000041113 ENSDART00000060251 N/A N/A N/A 4.845±0.61 N/A N/A 5.829±1.52 28.482±14.49 1.076±0.00 N/A 1.868±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000065268 ENST00000251289 N/A N/A N/A N/A 1.796±0.00 N/A N/A 4.995±0.00 7.212±0.00 0.676±0.00 N/A 6.200±0.00 N/A 3.250±0.00
ENST00000585809 2.333±0.00 7.585±0.00 N/A 2.254±0.00 2.406±1.56 N/A N/A 2.960±0.00 N/A 1.260±0.00 4.151±0.00 16.662±4.50 25.105±15.53 12.113±0.00
ENST00000586317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587001 2.676±0.00 4.321±0.00 N/A 5.012±0.00 1.948±0.00 1.644±0.00 1.869±0.00 N/A N/A 0.433±0.00 N/A 3.176±0.00 4.757±0.00 9.776±0.00
ENST00000590354 3.113±0.00 15.066±0.00 N/A 7.617±0.00 8.693±0.00 7.313±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591155 N/A N/A N/A 1.178±0.00 N/A N/A N/A N/A N/A N/A N/A 6.321±5.43 N/A N/A
ENST00000591276 N/A N/A 1.228±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591985 2.603±0.00 8.331±0.00 N/A N/A 2.805±2.08 3.195±2.99 1.919±0.00 7.469±0.00 1.135±0.00 1.598±0.00 11.692±0.00 N/A 5.542±0.88 7.757±0.00
ENST00000591997 N/A N/A N/A 0.399±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607440 1.414±0.00 N/A 0.444±0.00 0.246±0.00 N/A 0.230±0.00 2.234±0.00 0.708±0.00 6.653±0.00 1.305±1.00 0.151±0.00 N/A 6.759±0.00 3.715±0.00
ENSG00000182087 ENST00000333175 N/A N/A 1.778±0.00 12.283±0.00 N/A 11.039±0.00 6.030±0.00 N/A 0.880±0.00 10.093±6.76 4.477±0.00 21.255±0.00 34.200±0.00 46.045±0.00
ENST00000356663 23.260±0.00 24.300±0.00 2.724±0.00 10.535±5.41 13.050±9.71 8.382±4.43 9.026±6.66 33.338±19.79 16.155±12.75 29.931±0.00 12.124±8.70 28.911±22.97 38.436±19.54 27.215±5.76
ENST00000586250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 51.907±0.00 N/A N/A
ENST00000586704 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.664±0.00 N/A N/A N/A N/A
ENST00000589055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592052 N/A N/A N/A N/A 18.670±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.398±0.00 19.015±0.00
ENST00000592618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593068 18.389±0.00 23.556±0.00 N/A N/A 14.910±0.00 10.767±0.00 N/A N/A N/A N/A N/A N/A N/A 24.834±0.00
ENST00000607316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000266990 ENST00000588380 0.261±0.00 0.897±0.00 N/A 0.579±0.00 0.412±0.23 0.273±0.00 0.460±0.00 0.724±0.00 0.286±0.00 0.891±0.00 0.069±0.00 0.359±0.26 N/A 0.778±0.19
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000013858 ENSMUST00000052885 56.061±13.91 108.850±27.56 40.559±3.16 50.343±26.73 63.612±24.00 76.529±3.65 55.531±10.33 74.005±10.16 36.093±5.68 58.461±8.86 25.717±6.79 66.564±30.76 32.789±14.15 55.112±25.11
ENSMUST00000124536 23.673±2.98 89.678±22.26 26.228±1.92 30.755±22.43 48.720±28.13 69.027±12.24 19.052±1.69 32.413±6.06 35.422±11.03 39.672±11.37 8.305±0.66 50.056±16.35 24.921±13.85 20.527±9.26
ENSMUST00000124889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035754 ENSMUST00000045247 11.420±4.81 23.695±7.90 6.160±0.84 10.895±4.37 9.976±2.64 13.400±4.70 8.630±2.88 18.609±4.49 12.009±5.61 8.448±1.46 6.767±0.98 20.986±9.77 8.603±6.69 8.205±5.04

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