C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ataxin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000066427 ATXN3 9606 - 14:92038652-92106621 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000340660 ATXN3-003 92064094-92106610 protein_coding
  ENST00000359366 ATXN3-002 92062774-92106590 nonsense_mediated_decay
  ENST00000393287 ATXN3-201 92058552-92106621 protein_coding
  ENST00000429774 ATXN3-202 92058552-92106621 protein_coding
  ENST00000454964 ATXN3-006 92096277-92106564 retained_intron
  ENST00000502250 ATXN3-004 92063881-92106582 protein_coding
  ENST00000503767 ATXN3-005 92064094-92106600 protein_coding
  ENST00000504047 ATXN3-011 92093552-92106591 processed_transcript
  ENST00000506466 ATXN3-008 92081023-92106573 protein_coding
  ENST00000507965 ATXN3-010 92093379-92106573 retained_intron
  ENST00000511362 ATXN3-012 92090379-92106567 processed_transcript
  ENST00000515746 ATXN3-007 92080988-92106563 nonsense_mediated_decay
  ENST00000526245 ATXN3-013 92058552-92093317 processed_transcript
  ENST00000526872 ATXN3-014 92082343-92096838 protein_coding
  ENST00000532032 ATXN3-015 92070745-92106562 protein_coding
  ENST00000545170 ATXN3-203 92058552-92106621 protein_coding
  ENST00000553287 ATXN3-044 92070938-92106574 processed_transcript
  ENST00000553309 ATXN3-045 92070938-92106574 processed_transcript
  ENST00000553488 ATXN3-024 92070938-92106574 nonsense_mediated_decay
  ENST00000553491 ATXN3-032 92070938-92106574 protein_coding
  ENST00000553498 ATXN3-048 92070938-92106574 processed_transcript
  ENST00000553570 ATXN3-039 92070938-92106574 nonsense_mediated_decay
  ENST00000553686 ATXN3-033 92070938-92106574 processed_transcript
  ENST00000554040 ATXN3-025 92070938-92106574 processed_transcript
  ENST00000554214 ATXN3-034 92070938-92106574 processed_transcript
  ENST00000554350 ATXN3-043 92070938-92106574 nonsense_mediated_decay
  ENST00000554491 ATXN3-046 92070938-92106574 processed_transcript
  ENST00000554592 ATXN3-026 92070935-92106574 protein_coding
  ENST00000554672 ATXN3-019 92070935-92106574 protein_coding
  ENST00000554673 ATXN3-022 92080965-92106574 nonsense_mediated_decay
  ENST00000554994 ATXN3-040 92070938-92106574 nonsense_mediated_decay
  ENST00000555381 ATXN3-017 92070935-92106574 protein_coding
  ENST00000555816 ATXN3-021 92070935-92106574 nonsense_mediated_decay
  ENST00000555958 ATXN3-038 92070938-92106574 processed_transcript
  ENST00000556082 ATXN3-049 92070938-92106574 nonsense_mediated_decay
  ENST00000556220 ATXN3-029 92070938-92106574 protein_coding
  ENST00000556274 ATXN3-036 92070938-92106574 nonsense_mediated_decay
  ENST00000556288 ATXN3-035 92070938-92106574 nonsense_mediated_decay
  ENST00000556315 ATXN3-027 92070935-92106574 nonsense_mediated_decay
  ENST00000556339 ATXN3-037 92070938-92106574 processed_transcript
  ENST00000556374 ATXN3-031 92070938-92106574 nonsense_mediated_decay
  ENST00000556644 ATXN3-023 92070938-92106574 processed_transcript
  ENST00000556671 ATXN3-042 92070938-92106574 nonsense_mediated_decay
  ENST00000556898 ATXN3-028 92070935-92106574 nonsense_mediated_decay
  ENST00000556958 ATXN3-030 92070938-92106574 nonsense_mediated_decay
  ENST00000557030 ATXN3-047 92070938-92106573 nonsense_mediated_decay
  ENST00000557311 ATXN3-020 92070935-92106574 protein_coding
  ENST00000558190 ATXN3-001 92038652-92106610 protein_coding
  ENST00000564606 ATXN3-050 92044775-92050395 processed_transcript
  ENST00000568290 ATXN3-051 92044806-92050646 processed_transcript
  ENST00000617719 ATXN3-204 92070938-92106574 protein_coding
  ENST00000620536 ATXN3-205 92070976-92106621 protein_coding
  ENST00000621269 ATXN3-206 92080968-92106621 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393287ENST00000429774ENST00000532032ENST00000557311ENST00000558190
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393287 1.053±0.00 N/A 1.867±0.00 N/A 2.178±1.00 N/A 4.562±0.00 2.762±1.80 N/A 2.060±0.75 0.698±0.00 1.825±0.00
ENST00000429774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.665±0.00 N/A
ENST00000532032 N/A N/A N/A N/A N/A N/A N/A N/A 4.833±0.00 N/A N/A N/A
ENST00000557311 N/A N/A 17.013±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558190 N/A 0.905±0.00 0.590±0.00 0.592±0.00 N/A 0.722±0.00 N/A 0.476±0.00 0.233±0.00 0.935±0.00 0.179±0.00 1.558±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LX CIL_0002LX_0002 CGP 14:91869412-92040896

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0005759 ISS mitochondrial matrix
GO:0005829 IDA cytosol
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006508 IEA proteolysis
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0006515 ISS misfolded or incompletely synthesized protein catabolic process
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0008219 IEA cell death
GO:0008242 IEA omega peptidase activity
GO:0010810 IMP regulation of cell-substrate adhesion
GO:0030036 IMP actin cytoskeleton organization
GO:0031625 ISS ubiquitin protein ligase binding
GO:0031966 ISS mitochondrial membrane
GO:0034605 ISS cellular response to heat
GO:0035520 ISS monoubiquitinated protein deubiquitination
GO:0042405 ISS nuclear inclusion body
GO:0042802 IPI identical protein binding
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045104 IMP intermediate filament cytoskeleton organization
GO:0051117 IPI ATPase binding
GO:0061578 IDA Lys63-specific deubiquitinase activity
GO:0070536 IDA protein K63-linked deubiquitination
GO:0071108 IDA protein K48-linked deubiquitination
GO:0071218 ISS cellular response to misfolded protein
GO:1990380 IDA Lys48-specific deubiquitinase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009264 ATXN3 ataxin 3 protein_coding Danio_rerio

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