C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558190 ATXN3-001 ENSG00000066427 9606 - 14:92038652-92106610 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLungMuscleOvaryPlacentaTestisENST00000558190
Transcript ID Adrenal Brain Breast Kidney Lung Muscle Ovary Placenta Testis
ENST00000558190 0.905±0.00 0.590±0.00 0.592±0.00 0.722±0.00 0.476±0.00 0.233±0.00 0.935±0.00 0.179±0.00 1.558±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LX CIL_0002LX_0002 CGP 14:91869412-92040896

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0005759 ISS mitochondrial matrix
GO:0005829 IDA cytosol
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006508 IEA proteolysis
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0006515 ISS misfolded or incompletely synthesized protein catabolic process
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0008219 IEA cell death
GO:0008242 IEA omega peptidase activity
GO:0010810 IMP regulation of cell-substrate adhesion
GO:0030036 IMP actin cytoskeleton organization
GO:0031625 ISS ubiquitin protein ligase binding
GO:0031966 ISS mitochondrial membrane
GO:0034605 ISS cellular response to heat
GO:0035520 ISS monoubiquitinated protein deubiquitination
GO:0042405 ISS nuclear inclusion body
GO:0042802 IPI identical protein binding
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045104 IMP intermediate filament cytoskeleton organization
GO:0051117 IPI ATPase binding
GO:0061578 IDA Lys63-specific deubiquitinase activity
GO:0070536 IDA protein K63-linked deubiquitination
GO:0071108 IDA protein K48-linked deubiquitination
GO:0071218 ISS cellular response to misfolded protein
GO:1990380 IDA Lys48-specific deubiquitinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021606 Atxn3-001 protein_coding Mus_musculus 0 1295
ENSMUST00000161011 Atxn3-002 protein_coding Mus_musculus 0 1188
ENSMUST00000160251 Atxn3-003 protein_coding Mus_musculus 0 1162
ENSMUST00000159883 Atxn3-004 protein_coding Mus_musculus 0 1092
ENSMUST00000160186 Atxn3-005 nonsense_mediated_decay Mus_musculus 0 326
ENSMUST00000085086 Trip11-002 processed_transcript Mus_musculus 0 202
ENSMUST00000176728 Trip11-006 protein_coding Mus_musculus 0 202
ENSMUST00000177536 Trip11-003 protein_coding Mus_musculus 0 202
ENSMUST00000021605 Trip11-001 protein_coding Mus_musculus 0 202
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000003 62

Loading