C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000067840 PDZD4 9606 - X:153802166-153830565 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000164640 PDZD4-002 153802166-153830490 protein_coding
  ENST00000393758 PDZD4-201 153802168-153830548 protein_coding
  ENST00000468491 PDZD4-007 153807327-153829670 processed_transcript
  ENST00000475140 PDZD4-003 153805093-153829856 processed_transcript
  ENST00000480418 PDZD4-001 153805582-153830565 processed_transcript
  ENST00000480650 PDZD4-006 153806071-153830364 nonsense_mediated_decay
  ENST00000483693 PDZD4-004 153805545-153830143 processed_transcript
  ENST00000484792 PDZD4-005 153804879-153808139 processed_transcript
  ENST00000544474 PDZD4-202 153802168-153830548 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000164640ENST00000393758ENST00000468491ENST00000475140ENST00000480418ENST00000484792ENST00000544474
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000164640 N/A 2.708±0.00 11.487±8.16 0.951±0.65 4.095±0.00 0.741±0.00 N/A N/A N/A N/A 0.644±0.63 0.676±0.00 4.493±0.00
ENST00000393758 0.963±0.00 N/A N/A N/A 1.218±0.00 N/A N/A N/A 1.199±0.00 N/A 0.792±0.49 N/A N/A
ENST00000468491 N/A N/A N/A 1.126±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475140 N/A N/A N/A N/A N/A N/A N/A 1.739±0.00 N/A N/A N/A 0.378±0.00 N/A
ENST00000480418 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.067±0.00 N/A N/A N/A
ENST00000484792 N/A N/A N/A 0.376±0.00 N/A N/A N/A N/A 0.747±0.00 N/A N/A 0.380±0.00 3.499±0.00
ENST00000544474 0.792±0.00 N/A 34.522±24.34 N/A 3.004±0.00 N/A 0.125±0.00 0.578±0.00 2.293±0.00 0.271±0.07 0.616±0.50 0.413±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UT CIL_0001UT_0001 CGP X:153793516-153830565
CIL_0001US CIL_0001US_0001 CGP X:153802166-153909223

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060182 pdzd4 PDZ domain containing 4 protein_coding Danio_rerio
ENSDARG00000090564 PDZD4 (2 of 2) PDZ domain containing 4 protein_coding Danio_rerio
ENSMUSG00000002006 Pdzd4 PDZ domain containing 4 protein_coding Mus_musculus

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