C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cilia and flagella associated protein 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070761 CFAP20 9606 - 16:58113588-58129450 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262498 CFAP20-001 58113588-58129450 protein_coding
  ENST00000562443 CFAP20-006 58114962-58115450 processed_transcript
  ENST00000562622 CFAP20-002 58113606-58129371 retained_intron
  ENST00000564150 CFAP20-005 58113960-58115567 retained_intron
  ENST00000565880 CFAP20-007 58115401-58129361 protein_coding
  ENST00000567092 CFAP20-004 58115792-58129300 retained_intron
  ENST00000567660 CFAP20-003 58116558-58129368 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262498ENST00000562622ENST00000564150ENST00000565880ENST00000567660
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262498 5.676±0.00 9.794±0.00 1.931±0.00 14.652±1.19 4.153±1.86 4.931±2.95 7.391±4.05 7.998±2.82 5.980±2.39 7.119±4.94 2.427±0.51 15.885±6.71 24.129±8.13 20.033±3.68
ENST00000562622 N/A N/A N/A N/A 1.775±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564150 N/A N/A N/A N/A 5.425±0.00 N/A N/A N/A N/A 4.795±0.00 N/A 48.257±0.00 84.175±0.00 83.169±0.00
ENST00000565880 N/A N/A 4.192±0.00 N/A 1.893±0.00 5.517±0.00 2.112±0.00 N/A 5.484±0.00 5.858±0.00 2.623±0.00 7.059±0.00 N/A N/A
ENST00000567660 N/A N/A N/A N/A N/A N/A N/A 4.052±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0001 VISTA 16:57818949-58421282
CIL_0004RX CIL_0004RX_0001 CGP 16:58025566-58129450
CIL_0004RW CIL_0004RW_0001 CGP 16:58113588-58197920

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005814 IDA centriole
GO:0005874 IEA microtubule
GO:0005929 IDA cilium
GO:0007275 TAS multicellular organismal development
GO:0018095 IMP protein polyglutamylation
GO:0036064 IDA ciliary basal body
GO:0044822 IDA poly(A) RNA binding
GO:0060271 IMP cilium morphogenesis
GO:0060296 IDA regulation of cilium beat frequency involved in ciliary motility
GO:0070062 IDA extracellular vesicular exosome
GO:2000147 IDA positive regulation of cell motility
GO:2000253 IDA positive regulation of feeding behavior

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039193 CFAP20 cilia and flagella associated protein 20 protein_coding Danio_rerio
ENSMUSG00000031796 Gtl3 cilia and flagella associated protein 20 protein_coding Mus_musculus

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