C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, Ca++ transporting, plasma membrane 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070961 ATP2B1 9606 - 12:89588049-89709300 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261173 ATP2B1-201 89588051-89656067 protein_coding
  ENST00000359142 ATP2B1-002 89588049-89656111 protein_coding
  ENST00000393164 ATP2B1-003 89590842-89630754 protein_coding
  ENST00000428670 ATP2B1-001 89588072-89708831 protein_coding
  ENST00000549585 ATP2B1-006 89641823-89656019 retained_intron
  ENST00000549727 ATP2B1-007 89603838-89612147 retained_intron
  ENST00000550716 ATP2B1-004 89591103-89603152 protein_coding
  ENST00000551009 ATP2B1-008 89603796-89610705 retained_intron
  ENST00000551310 ATP2B1-005 89655583-89709300 protein_coding
  ENST00000552275 ATP2B1-009 89601404-89603766 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261173ENST00000359142ENST00000393164ENST00000428670
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261173 2.426±0.00 1.398±0.00 2.333±0.00 N/A 1.090±0.34 7.373±0.00 0.565±0.00 2.107±0.95 2.792±2.27 5.459±2.73 1.476±0.00 2.073±0.63 4.616±3.98 6.121±1.24
ENST00000359142 N/A 1.487±0.00 N/A 29.326±15.49 N/A N/A 0.647±0.00 N/A N/A N/A 1.758±0.00 N/A N/A N/A
ENST00000393164 1.519±0.00 N/A N/A N/A 1.465±0.00 N/A 0.750±0.00 N/A N/A N/A 1.136±0.75 1.794±0.45 3.708±0.00 2.313±0.00
ENST00000428670 N/A 1.885±0.00 0.656±0.00 N/A 3.907±0.00 2.877±0.00 0.369±0.00 1.772±0.00 1.207±0.00 0.972±0.00 1.254±0.00 2.485±0.00 2.956±0.91 2.628±0.15

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005388 IEA calcium-transporting ATPase activity
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0007596 TAS blood coagulation
GO:0008152 IEA metabolic process
GO:0016020 IDA:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007788 atp2b1b ATPase, Ca++ transporting, plasma membrane 1b protein_coding Danio_rerio
ENSDARG00000012684 atp2b1a ATPase, Ca++ transporting, plasma membrane 1a protein_coding Danio_rerio
ENSMUSG00000019943 Atp2b1 ATPase, Ca++ transporting, plasma membrane 1 protein_coding Mus_musculus

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