C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily M, member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070985 TRPM5 9606 - 11:2404515-2423045 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000155858 TRPM5-001 2404515-2423045 protein_coding
  ENST00000528453 TRPM5-004 2404909-2423042 protein_coding
  ENST00000533060 TRPM5-003 2404903-2423042 protein_coding
  ENST00000533881 TRPM5-002 2404515-2423012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyLungOvaryTestisENST00000155858ENST00000528453ENST00000533060ENST00000533881
Transcript ID Adrenal Colon Kidney Lung Ovary Testis
ENST00000155858 N/A 0.013±0.00 N/A N/A 0.138±0.00 N/A
ENST00000528453 0.005±0.00 0.137±0.00 0.276±0.00 0.025±0.00 N/A 0.292±0.00
ENST00000533060 0.004±0.00 N/A N/A 0.004±0.00 N/A 0.116±0.00
ENST00000533881 N/A 0.112±0.00 N/A N/A 0.785±0.00 0.252±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BT CIL_0009BT_0001 VISTA 11:2074187-2675527
CIL_0008VI CIL_0008VI_0001 VISTA 11:2150916-2751083
CIL_0008FP CIL_0008FP_0001 VISTA 11:2232763-2834370
CIL_0008A3 CIL_0008A3_0001 VISTA 11:2289701-2893486

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 TAS ion channel activity
GO:0005227 IEA calcium activated cation channel activity
GO:0005244 IEA voltage-gated ion channel activity
GO:0005267 IEA potassium channel activity
GO:0005272 IEA sodium channel activity
GO:0005886 TAS plasma membrane
GO:0016021 IEA integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0050909 IEA sensory perception of taste
GO:0055085 TAS transmembrane transport
GO:0070588 TAS calcium ion transmembrane transport
GO:0071805 IEA potassium ion transmembrane transport
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059792 trpm5 transient receptor potential cation channel, subfamily M, member 5 protein_coding Danio_rerio
ENSMUSG00000009246 Trpm5 transient receptor potential cation channel, subfamily M, member 5 protein_coding Mus_musculus

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