| Transcript ID | Colon |
|---|---|
| ENSMUST00000009390 | 4.162±0.80 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Gene Info | |||||
|---|---|---|---|---|---|
| Description: | transient receptor potential cation channel, subfamily M, member 5 | ||||
| Gene Accession | Gene Name | Tax ID | Strand | Position | Gene Biotype |
ENSMUSG00000009246  |
Trpm5 | 10090 | - |
7:143069153-143094642  |
protein_coding |
| Transcript Accession | Transcript Name | Position | Transcript Biotype | ||
| ENSMUST00000009390 |
Trpm5-001 | 143071789-143094642 | protein_coding | ||
| ENSMUST00000126776 |
Trpm5-005 | 143071217-143074853 | retained_intron | ||
| ENSMUST00000133027 |
Trpm5-006 | 143080716-143081922 | retained_intron | ||
| ENSMUST00000136602 |
Trpm5-008 | 143071091-143074037 | protein_coding | ||
| ENSMUST00000146075 |
Trpm5-004 | 143072178-143087129 | retained_intron | ||
| ENSMUST00000148715 |
Trpm5-007 | 143069153-143074561 | protein_coding | ||
| ENSMUST00000150589 |
Trpm5-003 | 143071529-143087214 | retained_intron | ||
| ENSMUST00000150867 |
Trpm5-002 | 143072342-143094606 | nonsense_mediated_decay | ||
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0009BT | CIL_0009BT_0002 | VISTA | 7:142749845-143351046 |
| CIL_0008VI | CIL_0008VI_0002 | VISTA | 7:142812060-143412968 |
| CIL_0008FP | CIL_0008FP_0002 | VISTA | 7:142853813-143455333 |
| CIL_0008A3 | CIL_0008A3_0002 | VISTA | 7:142895498-143499796 |
Gene Ontology |
||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005227 | IDA | calcium activated cation channel activity |
| GO:0005244 | IEA | voltage-gated ion channel activity |
| GO:0005267 | IDA | potassium channel activity |
| GO:0005272 | IDA | sodium channel activity |
| GO:0005886 | IEA | plasma membrane |
| GO:0016021 | IEA | integral component of membrane |
| GO:0034220 | IDA | ion transmembrane transport |
| GO:0034765 | IEA | regulation of ion transmembrane transport |
| GO:0035725 | IDA | sodium ion transmembrane transport |
| GO:0050909 | IEA | sensory perception of taste |
| GO:0071805 | IDA | potassium ion transmembrane transport |
| GO:0098655 | IDA | cation transmembrane transport |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Description | Biotype | Species | |
|
ENSDARG00000059792
|
trpm5 | transient receptor potential cation channel, subfamily M, member 5 | protein_coding | Danio_rerio | |
|
ENSG00000070985
|
TRPM5 | transient receptor potential cation channel, subfamily M, member 5 | protein_coding | Homo_sapiens | |
