C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily M, member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000533881 TRPM5-002 ENSG00000070985 9606 - 11:2404515-2423012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonOvaryTestisENST00000533881
Transcript ID Colon Ovary Testis
ENST00000533881 0.112±0.00 0.785±0.00 0.252±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BT CIL_0009BT_0001 VISTA 11:2074187-2675527
CIL_0008VI CIL_0008VI_0001 VISTA 11:2150916-2751083
CIL_0008FP CIL_0008FP_0001 VISTA 11:2232763-2834370
CIL_0008A3 CIL_0008A3_0001 VISTA 11:2289701-2893486

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 TAS ion channel activity
GO:0005244 IEA voltage-gated ion channel activity
GO:0005886 TAS plasma membrane
GO:0016021 IEA integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0034765 IEA regulation of ion transmembrane transport
GO:0050909 IEA sensory perception of taste
GO:0055085 TAS transmembrane transport
GO:0070588 TAS calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009390 Trpm5-001 protein_coding Mus_musculus 0 3083
ENSMUST00000150589 Trpm5-003 retained_intron Mus_musculus 0 2726
ENSMUST00000150867 Trpm5-002 nonsense_mediated_decay Mus_musculus 0 2667
ENSMUST00000146075 Trpm5-004 retained_intron Mus_musculus 0 1969
ENSMUST00000126776 Trpm5-005 retained_intron Mus_musculus 0 420
ENSMUST00000148715 Trpm5-007 protein_coding Mus_musculus 0 355
ENSMUST00000136602 Trpm5-008 protein_coding Mus_musculus 0 195
ENSDART00000083969 trpm4a-201 protein_coding Danio_rerio 1e-31 143
ENSDART00000151329 trpm4a-001 protein_coding Danio_rerio 1e-31 143
ENSMUST00000042194 Trpm4-201 protein_coding Mus_musculus 4e-17 95
ENSMUST00000126206 Trpm2-007 retained_intron Mus_musculus 0.000000000000007 88
ENSMUST00000153842 Trpm2-004 retained_intron Mus_musculus 0.000000000000007 88
ENSMUST00000140471 Trpm2-005 retained_intron Mus_musculus 0.000000000000007 88
ENSMUST00000105400 Trpm2-002 processed_transcript Mus_musculus 0.000000000000007 88
ENSMUST00000105401 Trpm2-001 protein_coding Mus_musculus 0.000000000000007 88

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