C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Williams Beuren syndrome chromosome region 22
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000071462 WBSCR22 9606 + 7:73683025-73705161 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265758 WBSCR22-001 73683568-73698212 protein_coding
  ENST00000421304 WBSCR22-009 73683569-73687095 protein_coding
  ENST00000421744 WBSCR22-003 73683573-73696740 nonsense_mediated_decay
  ENST00000423497 WBSCR22-007 73683626-73698208 protein_coding
  ENST00000428163 WBSCR22-013 73683607-73694004 nonsense_mediated_decay
  ENST00000430270 WBSCR22-006 73683626-73698104 nonsense_mediated_decay
  ENST00000430446 WBSCR22-016 73686820-73698156 nonsense_mediated_decay
  ENST00000432522 WBSCR22-002 73683571-73694465 nonsense_mediated_decay
  ENST00000436944 WBSCR22-004 73683607-73705161 nonsense_mediated_decay
  ENST00000441822 WBSCR22-012 73683601-73692646 protein_coding
  ENST00000442099 WBSCR22-017 73690916-73698152 protein_coding
  ENST00000453316 WBSCR22-018 73692596-73698142 protein_coding
  ENST00000463307 WBSCR22-005 73683609-73698156 retained_intron
  ENST00000464615 WBSCR22-015 73683025-73686734 processed_transcript
  ENST00000471215 WBSCR22-008 73694114-73698136 retained_intron
  ENST00000478670 WBSCR22-010 73683597-73692873 retained_intron
  ENST00000487006 WBSCR22-014 73683631-73693551 retained_intron
  ENST00000496153 WBSCR22-011 73683597-73694101 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265758ENST00000421304ENST00000423497ENST00000428163ENST00000430270ENST00000430446ENST00000441822ENST00000463307ENST00000471215
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265758 19.288±0.00 23.224±0.00 2.745±0.00 14.777±7.62 9.118±3.70 8.407±5.54 11.383±8.34 35.977±0.00 11.764±6.93 10.374±7.46 19.708±16.89 29.449±15.31 30.434±6.02 54.391±20.96
ENST00000421304 N/A N/A N/A N/A N/A N/A 3.327±0.00 N/A N/A N/A 10.697±0.00 N/A N/A N/A
ENST00000423497 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.213±0.00 N/A N/A N/A N/A
ENST00000428163 23.051±0.00 24.280±0.00 N/A 46.790±0.00 23.420±0.00 24.489±0.00 12.503±8.47 3.950±0.00 4.852±0.00 N/A N/A 80.549±0.00 15.939±0.00 93.061±1.11
ENST00000430270 N/A 14.803±0.00 N/A N/A 12.290±0.00 10.597±0.00 N/A N/A N/A N/A 2.070±0.00 31.865±0.00 N/A 32.963±2.50
ENST00000430446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.703±0.00 49.721±0.00 N/A 45.685±0.00
ENST00000441822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 77.745±0.00 17.002±0.00 78.062±0.00
ENST00000463307 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.722±0.00 N/A N/A N/A N/A
ENST00000471215 N/A 3.084±0.00 0.711±0.00 N/A 0.916±0.00 0.587±0.00 N/A N/A N/A 1.786±1.26 N/A 3.833±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006364 IEA rRNA processing
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0008168 NAS:IEA methyltransferase activity
GO:0016568 IEA chromatin modification
GO:0032259 IEA methylation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063596 wbscr22 Williams Beuren syndrome chromosome region 22 protein_coding Danio_rerio
ENSMUSG00000005378 Wbscr22 Williams Beuren syndrome chromosome region 22 protein_coding Mus_musculus

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