C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thyroid hormone receptor interactor 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000071539 TRIP13 9606 + 5:892643-919357 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000166345 TRIP13-001 892643-918120 protein_coding
  ENST00000508430 TRIP13-005 917028-917900 processed_transcript
  ENST00000508456 TRIP13-007 893025-896790 processed_transcript
  ENST00000509210 TRIP13-004 915928-917448 processed_transcript
  ENST00000510412 TRIP13-003 914559-919357 processed_transcript
  ENST00000512024 TRIP13-002 892884-908932 retained_intron
  ENST00000513435 TRIP13-006 893642-908074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLungOvaryPlacentaTestisENST00000166345
Transcript ID Colon Lung Ovary Placenta Testis
ENST00000166345 1.280±0.00 1.152±0.00 7.589±5.59 1.890±0.41 15.531±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006W3 CIL_0006W3_0002 CGP 5:795606-892824
CIL_0006VW CIL_0006VW_0002 CGP 5:850291-919357
CIL_0006VX CIL_0006VX_0002 CGP 5:892643-1038943

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001556 IEA oocyte maturation
GO:0001673 IEA male germ cell nucleus
GO:0003712 TAS transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005524 NAS:IEA ATP binding
GO:0005634 TAS nucleus
GO:0006302 ISS double-strand break repair
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007130 ISS synaptonemal complex assembly
GO:0007131 ISS reciprocal meiotic recombination
GO:0007141 IEA male meiosis I
GO:0007144 IEA female meiosis I
GO:0007283 ISS spermatogenesis
GO:0007286 IEA spermatid development
GO:0042802 IEA identical protein binding
GO:0048477 ISS oogenesis
GO:2001141 TAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025043 trip13 thyroid hormone receptor interactor 13 protein_coding Danio_rerio
ENSMUSG00000021569 Trip13 thyroid hormone receptor interactor 13 protein_coding Mus_musculus

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