C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroid hormone receptor interactor 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000166345 TRIP13-001 ENSG00000071539 9606 + 5:892643-918120 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLungOvaryPlacentaTestisENST00000166345
Transcript ID Colon Lung Ovary Placenta Testis
ENST00000166345 1.280±0.00 1.152±0.00 7.589±5.59 1.890±0.41 15.531±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006W3 CIL_0006W3_0002 CGP 5:795606-892824
CIL_0006VW CIL_0006VW_0002 CGP 5:850291-919357
CIL_0006VX CIL_0006VX_0002 CGP 5:892643-1038943

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001556 IEA oocyte maturation
GO:0001673 IEA male germ cell nucleus
GO:0003712 TAS transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005524 NAS:IEA ATP binding
GO:0005634 TAS nucleus
GO:0006302 ISS double-strand break repair
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007130 ISS synaptonemal complex assembly
GO:0007131 ISS reciprocal meiotic recombination
GO:0007141 IEA male meiosis I
GO:0007144 IEA female meiosis I
GO:0007283 ISS spermatogenesis
GO:0007286 IEA spermatid development
GO:0042802 IEA identical protein binding
GO:0048477 ISS oogenesis
GO:2001141 TAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022053 Trip13-201 protein_coding Mus_musculus 0 1526

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