C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: acid-sensing (proton-gated) ion channel family member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000072182 ASIC4 9606 + 2:219514170-219538772 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000347842 ASIC4-001 219514330-219538772 protein_coding
  ENST00000358078 ASIC4-002 219514330-219538772 protein_coding
  ENST00000461395 ASIC4-004 219514170-219534058 retained_intron
  ENST00000473709 ASIC4-005 219517241-219533031 processed_transcript
  ENST00000474489 ASIC4-003 219517136-219538772 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000347842ENST00000461395ENST00000473709ENST00000474489
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000347842 N/A 0.038±0.00 0.527±0.29 N/A N/A N/A N/A 0.103±0.00 0.017±0.00 0.056±0.00 0.053±0.00
ENST00000461395 0.038±0.00 0.015±0.00 N/A 0.007±0.00 0.007±0.00 0.029±0.00 0.025±0.00 N/A 0.015±0.00 0.017±0.00 N/A
ENST00000473709 N/A N/A N/A N/A N/A 0.451±0.00 N/A N/A 0.091±0.00 N/A N/A
ENST00000474489 N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 0.078±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_000415 CIL_000415_0002 CGP 2:219498867-219538772
CIL_000414 CIL_000414_0002 CGP 2:219514170-219543787

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 TAS ion channel activity
GO:0005272 IEA sodium channel activity
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006814 IEA sodium ion transport
GO:0015081 TAS sodium ion transmembrane transporter activity
GO:0016020 IEA membrane
GO:0034220 TAS ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004243 asic4b acid-sensing (proton-gated) ion channel family member 4b protein_coding Danio_rerio
ENSDARG00000025162 asic4a acid-sensing (proton-gated) ion channel family member 4a protein_coding Danio_rerio
ENSMUSG00000033007 Asic4 acid-sensing (proton-gated) ion channel family member 4 protein_coding Mus_musculus

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