C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000414_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004243-ENSDARG00000078037 CGP 7955 6:13515596-13625700
GeneTranscriptPositionBiotype
ENSDARG00000004243 (asic4b)
acid-sensing (proton-gated) ion channel family member 4b 		ENSDART00000104716 (asic4b-001) 13515596-13598177 protein_coding
ENSDARG00000078037 (chpfb)
chondroitin polymerizing factor b 		ENSDART00000111102 (chpfb-201) 13608507-13625700 protein_coding
ENSDART00000151771 (chpfb-001) 13607999-13618777 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000414_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000072182-ENSG00000123989 CGP 9606 2:219514170-219543787
GeneTranscriptPositionBiotype
ENSG00000072182 (ASIC4)
acid-sensing (proton-gated) ion channel family member 4 		ENST00000347842 (ASIC4-001) 219514330-219538772 protein_coding
ENST00000358078 (ASIC4-002) 219514330-219538772 protein_coding
ENST00000461395 (ASIC4-004) 219514170-219534058 retained_intron
ENST00000473709 (ASIC4-005) 219517241-219533031 processed_transcript
ENST00000474489 (ASIC4-003) 219517136-219538772 retained_intron
ENSG00000123989 (CHPF)
chondroitin polymerizing factor 		ENST00000243776 (CHPF-001) 219538947-219543787 protein_coding
ENST00000373891 (CHPF-002) 219541460-219543573 protein_coding
ENST00000535926 (CHPF-201) 219538948-219543097 protein_coding
ENSG00000188760 (TMEM198)
transmembrane protein 198 		ENST00000344458 (TMEM198-002) 219543663-219550579 protein_coding
ENST00000373883 (TMEM198-001) 219544023-219550595 protein_coding
ENST00000421791 (TMEM198-003) 219544006-219548020 protein_coding
ENST00000451952 (TMEM198-004) 219544050-219547549 protein_coding
ENSG00000227432 (AC053503.11)
 ENST00000429882 (AC053503.11-001) 219482073-219516877 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_000414_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033007-ENSMUSG00000032997 CGP 10090 1:75450436-75479307
GeneTranscriptPositionBiotype
ENSMUSG00000032997 (Chpf)
chondroitin polymerizing factor 		ENSMUST00000079205 (Chpf-001) 75474569-75479271 protein_coding
ENSMUST00000094818 (Chpf-002) 75474575-75479307 protein_coding
ENSMUST00000124042 (Chpf-005) 75477510-75479114 nonsense_mediated_decay
ENSMUST00000138683 (Chpf-003) 75474576-75479119 nonsense_mediated_decay
ENSMUST00000143496 (Chpf-004) 75474576-75478746 retained_intron
ENSMUSG00000033007 (Asic4)
acid-sensing (proton-gated) ion channel family member 4 		ENSMUST00000037708 (Asic4-001) 75450699-75474343 protein_coding
ENSMUST00000113577 (Asic4-002) 75450436-75474340 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000414_0001ENSDARG00000004243ENSDART00000104716ENSDARG00000078037ENSDART00000111102ENSDART00000151771CIL_000414_0002ENSG00000072182ENST00000347842ENST00000358078ENST00000461395ENST00000473709ENST00000474489ENSG00000123989ENST00000243776ENST00000373891ENST00000535926ENSG00000188760ENST00000344458ENST00000373883ENST00000421791ENST00000451952ENSG00000227432ENST00000429882CIL_000414_0003ENSMUSG00000032997ENSMUST00000079205ENSMUST00000094818ENSMUST00000124042ENSMUST00000138683ENSMUST00000143496ENSMUSG00000033007ENSMUST00000037708ENSMUST00000113577
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000414_0001ENSDARG00000004243ENSDART00000104716ENSDARG00000078037ENSDART00000111102ENSDART00000151771CIL_000414_0002ENSG00000072182ENST00000347842ENST00000461395ENST00000473709ENST00000474489ENSG00000123989ENST00000243776ENST00000373891ENST00000535926ENSG00000188760ENST00000344458ENST00000373883ENSG00000227432ENST00000429882CIL_000414_0003ENSMUSG00000032997ENSMUST00000079205ENSMUST00000094818ENSMUST00000138683ENSMUST00000143496ENSMUSG00000033007ENSMUST00000037708ENSMUST00000113577
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004243 ENSDART00000104716 N/A N/A N/A 1.195±0.18 N/A N/A 0.063±0.04 0.099±0.00 0.079±0.00 N/A 0.128±0.00 N/A N/A N/A
ENSDARG00000078037 ENSDART00000111102 N/A N/A N/A 1.480±0.00 N/A N/A 0.091±0.00 0.453±0.00 N/A N/A 0.229±0.00 N/A N/A N/A
ENSDART00000151771 N/A N/A N/A 0.447±0.05 N/A N/A 0.217±0.00 N/A 0.071±0.00 N/A 0.604±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072182 ENST00000347842 N/A 0.038±0.00 N/A 0.527±0.29 N/A N/A N/A N/A N/A 0.103±0.00 N/A 0.017±0.00 0.056±0.00 0.053±0.00
ENST00000358078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461395 0.038±0.00 0.015±0.00 N/A N/A N/A 0.007±0.00 0.007±0.00 0.029±0.00 0.025±0.00 N/A N/A 0.015±0.00 0.017±0.00 N/A
ENST00000473709 N/A N/A N/A N/A N/A N/A N/A 0.451±0.00 N/A N/A N/A 0.091±0.00 N/A N/A
ENST00000474489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 0.078±0.00 N/A
ENSG00000123989 ENST00000243776 9.417±0.00 11.193±0.00 1.191±0.00 14.022±9.02 8.715±7.75 8.550±6.24 18.099±15.76 16.132±12.71 23.497±21.28 14.771±13.98 14.135±0.00 61.988±42.98 146.355±26.97 52.726±13.26
ENST00000373891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.675±0.00 N/A N/A N/A
ENST00000535926 N/A N/A N/A N/A N/A N/A 0.496±0.00 N/A N/A N/A 0.382±0.00 34.416±0.00 N/A N/A
ENSG00000188760 ENST00000344458 N/A N/A N/A 3.368±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373883 N/A N/A N/A 3.552±0.10 N/A N/A N/A N/A N/A N/A N/A 4.909±3.09 N/A N/A
ENST00000421791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227432 ENST00000429882 N/A 0.045±0.00 N/A 0.053±0.00 0.860±0.00 0.132±0.00 0.158±0.00 N/A N/A 0.292±0.00 0.166±0.00 0.102±0.00 0.117±0.00 0.222±0.14
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032997 ENSMUST00000079205 47.112±16.07 49.395±6.11 46.426±5.99 29.827±3.20 29.874±4.39 25.521±2.89 9.744±2.69 13.862±3.12 2.394±1.88 31.974±3.07 0.929±0.23 60.586±28.16 32.007±5.52 10.761±4.37
ENSMUST00000094818 N/A 17.233±4.02 N/A 3.572±0.28 5.925±2.95 5.861±1.02 N/A 2.521±0.76 0.367±0.32 6.605±2.69 0.213±0.00 13.378±5.14 N/A 2.781±0.31
ENSMUST00000124042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138683 5.028±0.00 8.877±0.80 N/A N/A 5.496±0.00 N/A N/A N/A 0.452±0.02 N/A 0.331±0.14 N/A N/A 3.530±0.00
ENSMUST00000143496 N/A N/A N/A N/A 0.779±0.00 N/A 1.115±0.00 N/A N/A N/A 0.171±0.06 1.960±0.26 N/A 0.330±0.00
ENSMUSG00000033007 ENSMUST00000037708 0.108±0.08 3.772±0.71 0.015±0.00 9.258±1.84 0.053±0.02 0.104±0.03 0.010±0.00 0.026±0.01 0.035±0.02 0.049±0.00 0.014±0.00 0.847±0.33 0.043±0.03 0.316±0.19
ENSMUST00000113577 0.033±0.00 1.288±0.70 0.034±0.00 3.071±0.93 N/A 0.034±0.00 0.012±0.00 0.035±0.00 0.035±0.00 N/A N/A 0.148±0.03 0.042±0.01 N/A

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