C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000415_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000023498-ENSDARG00000004243 CGP 7955 6:13416027-13598177
GeneTranscriptPositionBiotype
ENSDARG00000004243 (asic4b)
acid-sensing (proton-gated) ion channel family member 4b 		ENSDART00000104716 (asic4b-001) 13515596-13598177 protein_coding
ENSDARG00000023498 (gmppab)
GDP-mannose pyrophosphorylase Ab 		ENSDART00000032331 (gmppab-001) 13416027-13423416 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_000415_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144591-ENSG00000072182 CGP 9606 2:219498867-219538772
GeneTranscriptPositionBiotype
ENSG00000072182 (ASIC4)
acid-sensing (proton-gated) ion channel family member 4 		ENST00000347842 (ASIC4-001) 219514330-219538772 protein_coding
ENST00000358078 (ASIC4-002) 219514330-219538772 protein_coding
ENST00000461395 (ASIC4-004) 219514170-219534058 retained_intron
ENST00000473709 (ASIC4-005) 219517241-219533031 processed_transcript
ENST00000474489 (ASIC4-003) 219517136-219538772 retained_intron
ENSG00000144591 (GMPPA)
GDP-mannose pyrophosphorylase A 		ENST00000313597 (GMPPA-001) 219498867-219506987 protein_coding
ENST00000341142 (GMPPA-012) 219498915-219506987 protein_coding
ENST00000358215 (GMPPA-003) 219498901-219506988 protein_coding
ENST00000373908 (GMPPA-004) 219498906-219506988 protein_coding
ENST00000373917 (GMPPA-002) 219498888-219506935 protein_coding
ENST00000435316 (GMPPA-008) 219498909-219505555 protein_coding
ENST00000443704 (GMPPA-005) 219498905-219506933 nonsense_mediated_decay
ENST00000455657 (GMPPA-006) 219498907-219504132 protein_coding
ENST00000480034 (GMPPA-011) 219505725-219506694 retained_intron
ENST00000480506 (GMPPA-009) 219498884-219502441 retained_intron
ENST00000481170 (GMPPA-013) 219499775-219506987 retained_intron
ENST00000496536 (GMPPA-010) 219505940-219506422 retained_intron
ENST00000622191 (GMPPA-201) 219499955-219506988 protein_coding
ENSG00000227432 (AC053503.11)
 ENST00000429882 (AC053503.11-001) 219482073-219516877 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_000415_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033021-ENSMUSG00000033007 CGP 10090 1:75435930-75474343
GeneTranscriptPositionBiotype
ENSMUSG00000033007 (Asic4)
acid-sensing (proton-gated) ion channel family member 4 		ENSMUST00000037708 (Asic4-001) 75450699-75474343 protein_coding
ENSMUST00000113577 (Asic4-002) 75450436-75474340 protein_coding
ENSMUSG00000033021 (Gmppa)
GDP-mannose pyrophosphorylase A 		ENSMUST00000037796 (Gmppa-001) 75435930-75443174 protein_coding
ENSMUST00000113584 (Gmppa-002) 75435943-75443173 protein_coding
ENSMUST00000124539 (Gmppa-011) 75442224-75443179 retained_intron
ENSMUST00000131545 (Gmppa-008) 75436087-75441524 protein_coding
ENSMUST00000132291 (Gmppa-009) 75441620-75442932 retained_intron
ENSMUST00000133418 (Gmppa-005) 75435968-75441515 protein_coding
ENSMUST00000135453 (Gmppa-010) 75442166-75443173 retained_intron
ENSMUST00000140287 (Gmppa-007) 75435984-75439399 protein_coding
ENSMUST00000141124 (Gmppa-004) 75436113-75438328 protein_coding
ENSMUST00000143730 (Gmppa-006) 75435967-75440512 protein_coding
ENSMUST00000144874 (Gmppa-012) 75435982-75441609 protein_coding
ENSMUST00000145166 (Gmppa-003) 75435961-75438873 protein_coding
ENSMUST00000188097 (Gmppa-013) 75436942-75442028 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000415_0001ENSDARG00000004243ENSDART00000104716ENSDARG00000023498ENSDART00000032331CIL_000415_0002ENSG00000072182ENST00000347842ENST00000358078ENST00000461395ENST00000473709ENST00000474489ENSG00000144591ENST00000313597ENST00000341142ENST00000358215ENST00000373908ENST00000373917ENST00000435316ENST00000443704ENST00000455657ENST00000480034ENST00000480506ENST00000481170ENST00000496536ENST00000622191ENSG00000227432ENST00000429882CIL_000415_0003ENSMUSG00000033007ENSMUST00000037708ENSMUST00000113577ENSMUSG00000033021ENSMUST00000037796ENSMUST00000113584ENSMUST00000124539ENSMUST00000131545ENSMUST00000132291ENSMUST00000133418ENSMUST00000135453ENSMUST00000140287ENSMUST00000141124ENSMUST00000143730ENSMUST00000144874ENSMUST00000145166ENSMUST00000188097
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000415_0001ENSDARG00000004243ENSDART00000104716ENSDARG00000023498ENSDART00000032331CIL_000415_0002ENSG00000072182ENST00000347842ENST00000461395ENST00000473709ENST00000474489ENSG00000144591ENST00000313597ENST00000358215ENST00000373908ENST00000373917ENST00000435316ENST00000443704ENST00000455657ENST00000480506ENST00000481170ENST00000622191ENSG00000227432ENST00000429882CIL_000415_0003ENSMUSG00000033007ENSMUST00000037708ENSMUST00000113577ENSMUSG00000033021ENSMUST00000037796ENSMUST00000113584ENSMUST00000135453ENSMUST00000144874ENSMUST00000188097
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004243 ENSDART00000104716 N/A N/A N/A 1.195±0.18 N/A N/A 0.063±0.04 0.099±0.00 0.079±0.00 N/A 0.128±0.00 N/A N/A N/A
ENSDARG00000023498 ENSDART00000032331 N/A N/A N/A 2.182±0.23 N/A N/A 10.775±7.63 6.045±2.14 0.479±0.00 N/A 0.587±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072182 ENST00000347842 N/A 0.038±0.00 N/A 0.527±0.29 N/A N/A N/A N/A N/A 0.103±0.00 N/A 0.017±0.00 0.056±0.00 0.053±0.00
ENST00000358078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461395 0.038±0.00 0.015±0.00 N/A N/A N/A 0.007±0.00 0.007±0.00 0.029±0.00 0.025±0.00 N/A N/A 0.015±0.00 0.017±0.00 N/A
ENST00000473709 N/A N/A N/A N/A N/A N/A N/A 0.451±0.00 N/A N/A N/A 0.091±0.00 N/A N/A
ENST00000474489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 0.078±0.00 N/A
ENSG00000144591 ENST00000313597 4.082±0.00 9.006±0.00 N/A 2.515±1.48 5.828±0.00 2.136±0.00 0.213±0.00 16.761±0.00 9.243±0.00 N/A 3.741±3.60 10.369±0.00 7.068±0.00 5.852±0.00
ENST00000341142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000358215 2.560±0.00 N/A N/A 1.142±0.00 2.783±0.00 3.408±0.00 1.724±0.00 N/A N/A N/A N/A 4.604±1.32 2.324±0.00 3.771±0.00
ENST00000373908 1.924±0.00 N/A N/A 0.931±0.00 2.475±0.00 1.962±0.00 N/A 15.663±0.00 0.689±0.00 N/A N/A 5.156±0.00 N/A 3.039±0.00
ENST00000373917 N/A N/A N/A N/A 0.611±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435316 N/A N/A 3.375±0.00 N/A N/A N/A N/A 0.774±0.00 1.369±0.00 2.755±0.00 N/A 8.685±4.40 6.488±0.00 N/A
ENST00000443704 1.663±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.448±0.00 N/A N/A
ENST00000455657 N/A N/A N/A N/A N/A N/A N/A N/A 0.609±0.00 N/A N/A 1.242±0.00 N/A N/A
ENST00000480034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.466±0.00 N/A N/A N/A
ENST00000481170 0.387±0.00 N/A 0.118±0.00 0.419±0.00 0.474±0.00 0.401±0.20 N/A N/A 0.064±0.00 0.226±0.00 N/A 0.925±0.04 N/A N/A
ENST00000496536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622191 N/A N/A 0.813±0.00 0.954±0.00 1.555±0.00 1.789±0.00 4.797±0.00 1.591±0.00 31.864±0.00 4.597±3.99 10.238±0.00 7.472±6.62 21.475±13.24 N/A
ENSG00000227432 ENST00000429882 N/A 0.045±0.00 N/A 0.053±0.00 0.860±0.00 0.132±0.00 0.158±0.00 N/A N/A 0.292±0.00 0.166±0.00 0.102±0.00 0.117±0.00 0.222±0.14
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033007 ENSMUST00000037708 0.108±0.08 3.772±0.71 0.015±0.00 9.258±1.84 0.053±0.02 0.104±0.03 0.010±0.00 0.026±0.01 0.035±0.02 0.049±0.00 0.014±0.00 0.847±0.33 0.043±0.03 0.316±0.19
ENSMUST00000113577 0.033±0.00 1.288±0.70 0.034±0.00 3.071±0.93 N/A 0.034±0.00 0.012±0.00 0.035±0.00 0.035±0.00 N/A N/A 0.148±0.03 0.042±0.01 N/A
ENSMUSG00000033021 ENSMUST00000037796 11.490±2.79 10.666±1.61 21.213±6.37 13.979±3.48 15.035±5.95 19.037±4.44 7.096±1.37 12.737±1.16 12.685±6.83 10.491±3.77 9.756±1.93 10.452±2.58 15.301±1.33 9.407±6.10
ENSMUST00000113584 5.536±0.00 9.924±1.99 9.418±0.00 8.891±0.90 9.350±1.28 N/A 6.897±1.74 5.555±0.15 4.478±0.79 5.544±0.00 4.952±1.44 13.033±5.18 15.089±7.21 8.857±5.15
ENSMUST00000124539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.773±0.00 N/A
ENSMUST00000140287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144874 16.562±0.00 27.012±3.87 N/A 8.807±0.00 22.532±5.20 N/A N/A N/A N/A 17.638±0.00 N/A 24.432±0.00 16.883±7.43 10.215±5.96
ENSMUST00000145166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188097 N/A 19.307±0.48 N/A N/A N/A 29.080±7.25 N/A N/A N/A N/A N/A N/A N/A N/A

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