C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AF4/FMR2 family, member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000072364 AFF4 9606 - 5:132875379-132963634 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265343 AFF4-001 132875379-132963634 protein_coding
  ENST00000378593 AFF4-006 132897204-132934231 processed_transcript
  ENST00000378595 AFF4-004 132891817-132963618 protein_coding
  ENST00000421773 AFF4-009 132934620-132937740 protein_coding
  ENST00000425658 AFF4-005 132897204-132934238 protein_coding
  ENST00000465484 AFF4-003 132926701-132963513 retained_intron
  ENST00000477369 AFF4-007 132898283-132927562 retained_intron
  ENST00000478588 AFF4-008 132896811-132901082 processed_transcript
  ENST00000491831 AFF4-002 132903861-132963514 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265343ENST00000378595ENST00000478588
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265343 8.804±0.00 6.988±0.00 7.065±3.51 4.975±1.43 5.263±0.00 4.598±2.42 3.869±0.00 4.428±0.00 2.804±0.00 5.669±0.00 3.040±2.13 0.852±0.27 6.109±0.00
ENST00000378595 N/A N/A N/A N/A 4.222±0.00 1.272±0.00 N/A 4.944±0.00 N/A N/A 3.196±0.00 N/A N/A
ENST00000478588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.719±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005739 IDA mitochondrion
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007286 IEA spermatid development
GO:0008023 IDA transcription elongation factor complex
GO:0035327 ISS transcriptionally active chromatin

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001857 aff4 AF4/FMR2 family, member 4 protein_coding Danio_rerio
ENSMUSG00000049470 Aff4 AF4/FMR2 family, member 4 protein_coding Mus_musculus

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