C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AF4/FMR2 family, member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000049470 Aff4 10090 + 11:53350833-53421830 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060945 Aff4-001 53350833-53421830 protein_coding
  ENSMUST00000129019 Aff4-002 53410694-53415833 retained_intron
  ENSMUST00000130152 Aff4-006 53372974-53399625 processed_transcript
  ENSMUST00000136470 Aff4-004 53372580-53375710 retained_intron
  ENSMUST00000139054 Aff4-005 53368630-53375938 retained_intron
  ENSMUST00000152616 Aff4-007 53372966-53398399 protein_coding
  ENSMUST00000153821 Aff4-008 53368073-53372520 protein_coding
  ENSMUST00000154499 Aff4-003 53404547-53409530 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060945ENSMUST00000153821
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060945 12.895±5.00 10.594±1.24 9.930±3.98 12.130±6.35 10.466±2.00 7.127±3.12 5.092±1.10 7.572±1.85 2.834±0.74 13.384±1.56 3.434±1.42 14.061±6.21 13.588±6.10 5.851±2.04
ENSMUST00000153821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.173±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002BQ CIL_0002BQ_0002 CGP 11:53324679-53421830

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005739 IEA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007286 IMP spermatid development
GO:0008023 ISS transcription elongation factor complex
GO:0035327 IDA transcriptionally active chromatin

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001857 aff4 AF4/FMR2 family, member 4 protein_coding Danio_rerio
ENSG00000072364 AFF4 AF4/FMR2 family, member 4 protein_coding Homo_sapiens

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