C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AF4/FMR2 family, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265343 AFF4-001 ENSG00000072364 9606 - 5:132875379-132963634 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265343
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265343 8.804±0.00 6.988±0.00 7.065±3.51 4.975±1.43 5.263±0.00 4.598±2.42 3.869±0.00 4.428±0.00 2.804±0.00 5.669±0.00 3.040±2.13 0.852±0.27 6.109±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005739 IDA mitochondrion
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007286 IEA spermatid development
GO:0008023 IDA transcription elongation factor complex
GO:0035327 ISS transcriptionally active chromatin

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060945 Aff4-001 protein_coding Mus_musculus 0 5123
ENSMUST00000139054 Aff4-005 retained_intron Mus_musculus 0 1157
ENSMUST00000129019 Aff4-002 retained_intron Mus_musculus 0 857
ENSMUST00000136470 Aff4-004 retained_intron Mus_musculus 0 667
ENSMUST00000154499 Aff4-003 retained_intron Mus_musculus 0 654
ENSMUST00000130152 Aff4-006 processed_transcript Mus_musculus 0 575
ENSMUST00000153821 Aff4-008 protein_coding Mus_musculus 0 544
ENSMUST00000152616 Aff4-007 protein_coding Mus_musculus 0 462
ENSDART00000042840 aff4-201 protein_coding Danio_rerio 8e-38 165
ENSDART00000151748 aff4-001 protein_coding Danio_rerio 8e-38 165
ENSDART00000126998 aff4-202 protein_coding Danio_rerio 3e-37 163
ENSDART00000151350 aff4-003 processed_transcript Danio_rerio 3e-27 130

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