C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin-conjugating enzyme E2D 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000072401 UBE2D1 9606 + 10:58334975-58370753 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373910 UBE2D1-001 58334975-58370753 protein_coding
  ENST00000473824 UBE2D1-002 58364456-58369043 retained_intron
  ENST00000606483 UBE2D1-003 58368208-58369595 retained_intron
  ENST00000615793 UBE2D1-201 58334979-58370751 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373910ENST00000473824ENST00000606483ENST00000615793
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373910 4.536±0.00 3.093±0.00 N/A 3.213±0.33 3.398±0.62 3.545±0.86 8.114±2.24 2.910±1.20 2.330±1.09 2.619±0.02 13.308±7.23 4.195±1.14 3.328±0.76 2.501±1.97
ENST00000473824 N/A N/A N/A N/A N/A N/A 9.220±0.00 N/A N/A 1.593±0.00 N/A 1.527±0.00 1.000±0.00 1.406±0.00
ENST00000606483 N/A N/A 1.079±0.00 N/A N/A 1.230±0.00 N/A N/A 0.376±0.00 1.430±0.00 N/A N/A N/A 0.648±0.00
ENST00000615793 N/A 1.641±0.00 N/A 0.848±0.00 1.996±0.00 N/A N/A N/A N/A N/A 1.368±0.00 0.811±0.00 N/A 0.216±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018V CIL_00018V_0002 CGP 10:58334975-58399221

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0000151 IDA ubiquitin ligase complex
GO:0000209 IDA protein polyubiquitination
GO:0000278 TAS mitotic cell cycle
GO:0002224 TAS toll-like receptor signaling pathway
GO:0002756 TAS MyD88-independent toll-like receptor signaling pathway
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0007094 TAS mitotic spindle assembly checkpoint
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0010467 TAS gene expression
GO:0016881 IEA acid-amino acid ligase activity
GO:0030509 TAS BMP signaling pathway
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0034138 TAS toll-like receptor 3 signaling pathway
GO:0034142 TAS toll-like receptor 4 signaling pathway
GO:0035666 TAS TRIF-dependent toll-like receptor signaling pathway
GO:0043234 IDA protein complex
GO:0045087 TAS innate immune response
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0061418 TAS regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0070936 IDA protein K48-linked ubiquitination
GO:0071456 TAS cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038576 ube2d1b ubiquitin-conjugating enzyme E2D 1b protein_coding Danio_rerio
ENSMUSG00000019927 Ube2d1 ubiquitin-conjugating enzyme E2D 1 protein_coding Mus_musculus

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