C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00018V_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000038576-ENSDARG00000063145 CGP 7955 12:7909577-7935869
GeneTranscriptPositionBiotype
ENSDARG00000038576 (ube2d1b)
ubiquitin-conjugating enzyme E2D 1b 		ENSDART00000035762 (ube2d1b-001) 7909577-7925181 protein_coding
ENSDART00000149199 (ube2d1b-002) 7919635-7925148 retained_intron
ENSDART00000150205 (ube2d1b-003) 7919651-7925129 retained_intron
ENSDARG00000063145 (tfam)
transcription factor A, mitochondrial 		ENSDART00000092009 (tfam-001) 7926023-7935869 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00018V_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000072401-ENSG00000108064 CGP 9606 10:58334975-58399221
GeneTranscriptPositionBiotype
ENSG00000072401 (UBE2D1)
ubiquitin-conjugating enzyme E2D 1 		ENST00000373910 (UBE2D1-001) 58334975-58370753 protein_coding
ENST00000473824 (UBE2D1-002) 58364456-58369043 retained_intron
ENST00000606483 (UBE2D1-003) 58368208-58369595 retained_intron
ENST00000615793 (UBE2D1-201) 58334979-58370751 protein_coding
ENSG00000108064 (TFAM)
transcription factor A, mitochondrial 		ENST00000373895 (TFAM-004) 58385434-58395288 protein_coding
ENST00000373899 (TFAM-003) 58385345-58395184 processed_transcript
ENST00000395377 (TFAM-001) 58385604-58394539 protein_coding
ENST00000487519 (TFAM-002) 58385022-58399221 protein_coding

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00018V_0001ENSDARG00000038576ENSDART00000035762ENSDART00000149199ENSDART00000150205ENSDARG00000063145ENSDART00000092009CIL_00018V_0002ENSG00000072401ENST00000373910ENST00000473824ENST00000606483ENST00000615793ENSG00000108064ENST00000373895ENST00000373899ENST00000395377ENST00000487519
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00018V_0001ENSDARG00000038576ENSDART00000035762ENSDARG00000063145ENSDART00000092009CIL_00018V_0002ENSG00000072401ENST00000373910ENST00000473824ENST00000606483ENST00000615793ENSG00000108064ENST00000373895ENST00000373899ENST00000395377ENST00000487519
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000038576 ENSDART00000035762 N/A N/A N/A 26.228±3.71 N/A N/A 22.893±0.79 22.136±4.09 3.866±0.00 N/A 12.139±0.00 N/A N/A N/A
ENSDART00000149199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000150205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000063145 ENSDART00000092009 N/A N/A N/A 10.168±2.78 N/A N/A 11.102±3.86 7.670±2.65 0.630±0.00 N/A 5.352±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072401 ENST00000373910 4.536±0.00 3.093±0.00 N/A 3.213±0.33 3.398±0.62 3.545±0.86 8.114±2.24 2.910±1.20 2.330±1.09 2.619±0.02 13.308±7.23 4.195±1.14 3.328±0.76 2.501±1.97
ENST00000473824 N/A N/A N/A N/A N/A N/A 9.220±0.00 N/A N/A 1.593±0.00 N/A 1.527±0.00 1.000±0.00 1.406±0.00
ENST00000606483 N/A N/A 1.079±0.00 N/A N/A 1.230±0.00 N/A N/A 0.376±0.00 1.430±0.00 N/A N/A N/A 0.648±0.00
ENST00000615793 N/A 1.641±0.00 N/A 0.848±0.00 1.996±0.00 N/A N/A N/A N/A N/A 1.368±0.00 0.811±0.00 N/A 0.216±0.00
ENSG00000108064 ENST00000373895 4.181±0.00 4.116±0.00 N/A 2.194±1.20 1.139±0.00 2.511±0.00 3.411±2.23 3.777±2.38 2.905±0.00 2.005±0.54 3.220±0.00 4.277±1.46 4.293±1.33 6.546±0.00
ENST00000373899 N/A N/A N/A N/A N/A 4.565±0.00 N/A 1.859±0.00 N/A N/A N/A 4.547±0.00 4.948±0.00 20.337±3.52
ENST00000395377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.917±0.00 7.835±0.00 40.824±0.00
ENST00000487519 3.596±0.00 4.948±0.00 N/A 2.406±0.33 3.396±0.85 3.291±0.33 1.514±1.00 2.900±1.39 3.708±0.58 2.307±0.37 0.938±0.46 4.121±0.29 3.108±0.77 3.971±0.88

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