C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gasdermin B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000073605 GSDMB 9606 - 17:39904595-39919854 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309481 GSDMB-002 39904595-39918590 protein_coding
  ENST00000360317 GSDMB-003 39904595-39917316 protein_coding
  ENST00000394175 GSDMB-001 39904595-39917540 protein_coding
  ENST00000394179 GSDMB-201 39904597-39917316 protein_coding
  ENST00000418519 GSDMB-202 39904597-39918650 protein_coding
  ENST00000464556 GSDMB-006 39909453-39917147 retained_intron
  ENST00000468820 GSDMB-008 39905965-39912343 nonsense_mediated_decay
  ENST00000477054 GSDMB-016 39904596-39919854 retained_intron
  ENST00000479136 GSDMB-007 39904595-39907739 retained_intron
  ENST00000486560 GSDMB-009 39905271-39905938 retained_intron
  ENST00000519429 GSDMB-014 39906195-39907499 retained_intron
  ENST00000520542 GSDMB-010 39904597-39918635 protein_coding
  ENST00000522564 GSDMB-012 39904812-39917316 nonsense_mediated_decay
  ENST00000523371 GSDMB-011 39904812-39917316 nonsense_mediated_decay
  ENST00000524039 GSDMB-013 39904812-39917316 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309481ENST00000360317ENST00000394175ENST00000394179ENST00000464556ENST00000468820ENST00000477054ENST00000479136ENST00000520542ENST00000522564ENST00000524039
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309481 N/A N/A N/A N/A N/A 3.550±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000360317 N/A N/A N/A N/A N/A 1.584±0.00 N/A N/A 1.274±0.00 N/A N/A 6.648±5.03 0.939±0.05 N/A
ENST00000394175 N/A N/A N/A N/A N/A N/A N/A 1.580±0.00 N/A N/A 0.347±0.00 6.172±5.13 N/A 2.681±0.00
ENST00000394179 N/A N/A N/A N/A N/A 1.829±0.00 N/A N/A N/A 2.726±0.00 0.393±0.00 2.984±0.00 0.416±0.00 N/A
ENST00000464556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.634±0.00 2.834±0.00 4.207±0.00
ENST00000468820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.207±0.00 N/A 4.702±0.00
ENST00000477054 0.766±0.00 2.278±0.00 0.300±0.00 0.825±0.00 0.947±0.65 0.745±0.00 N/A 1.184±0.45 0.780±0.00 1.584±0.07 0.146±0.00 1.374±0.09 0.177±0.05 0.835±0.27
ENST00000479136 4.140±0.00 2.637±0.00 0.190±0.00 0.583±0.20 1.580±0.00 1.418±0.44 0.222±0.00 N/A 0.501±0.00 1.148±0.15 0.067±0.00 2.178±1.37 N/A 0.860±0.00
ENST00000520542 N/A N/A N/A N/A 1.889±0.00 8.334±0.00 N/A N/A 0.987±0.00 N/A N/A 9.988±7.09 0.756±0.33 N/A
ENST00000522564 N/A N/A N/A N/A N/A N/A N/A 1.126±0.00 N/A N/A N/A N/A N/A 1.568±0.00
ENST00000524039 N/A N/A N/A 0.261±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080Z CIL_00080Z_0001 VISTA 17:39318232-39918735
CIL_00098W CIL_00098W_0001 VISTA 17:39359510-39962707
CIL_0007WH CIL_0007WH_0001 VISTA 17:39374871-39978277
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm

Homologs

No Homologs available.

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