C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, Ca++ transporting, ubiquitous
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000074370 ATP2A3 9606 - 17:3923870-3964464 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309890 ATP2A3-201 3923870-3964464 protein_coding
  ENST00000352011 ATP2A3-015 3925291-3964346 protein_coding
  ENST00000359983 ATP2A3-005 3925291-3964291 protein_coding
  ENST00000397035 ATP2A3-004 3923875-3964419 protein_coding
  ENST00000397041 ATP2A3-001 3923875-3964419 protein_coding
  ENST00000397043 ATP2A3-002 3925346-3964415 protein_coding
  ENST00000570773 ATP2A3-008 3925260-3930871 retained_intron
  ENST00000570845 ATP2A3-006 3925291-3930371 protein_coding
  ENST00000571245 ATP2A3-009 3928158-3930427 retained_intron
  ENST00000572116 ATP2A3-007 3925378-3930371 protein_coding
  ENST00000572176 ATP2A3-011 3934936-3936352 retained_intron
  ENST00000572694 ATP2A3-014 3941439-3945376 retained_intron
  ENST00000574202 ATP2A3-013 3953281-3964236 retained_intron
  ENST00000574999 ATP2A3-010 3925047-3928620 retained_intron
  ENST00000576957 ATP2A3-012 3929328-3937087 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309890ENST00000397035ENST00000397041ENST00000397043ENST00000570773ENST00000572176ENST00000572694ENST00000574999ENST00000576957
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309890 N/A N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A N/A N/A N/A N/A
ENST00000397035 N/A N/A N/A 0.360±0.00 N/A N/A N/A N/A N/A N/A 0.108±0.00 N/A N/A 0.726±0.00
ENST00000397041 1.618±0.00 36.396±0.00 N/A N/A 1.710±0.46 4.361±1.19 0.506±0.42 2.229±0.00 0.455±0.06 5.457±4.82 N/A 8.022±5.49 1.917±1.20 1.503±0.06
ENST00000397043 N/A N/A N/A N/A N/A 1.832±0.00 0.364±0.00 0.388±0.00 0.348±0.00 N/A 0.253±0.00 N/A 0.684±0.00 N/A
ENST00000570773 N/A N/A 0.986±0.00 0.070±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572176 N/A N/A N/A 0.524±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572694 N/A N/A N/A N/A 4.243±0.00 N/A N/A N/A 1.601±0.00 N/A N/A N/A N/A N/A
ENST00000574999 N/A N/A N/A N/A N/A N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A
ENST00000576957 N/A N/A N/A N/A N/A N/A N/A 0.424±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005388 IEA calcium-transporting ATPase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006810 TAS transport
GO:0006816 TAS:IEA calcium ion transport
GO:0007596 TAS blood coagulation
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016529 IDA sarcoplasmic reticulum
GO:0031095 TAS platelet dense tubular network membrane
GO:0034220 TAS ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0055085 TAS transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060978 atp2a3 ATPase, Ca++ transporting, ubiquitous protein_coding Danio_rerio
ENSMUSG00000020788 Atp2a3 ATPase, Ca++ transporting, ubiquitous protein_coding Mus_musculus

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