C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, Ca++ transporting, ubiquitous
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020788 Atp2a3 10090 + 11:72961169-72993044 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021142 Atp2a3-201 72961169-72993043 protein_coding
  ENSMUST00000108484 Atp2a3-002 72961169-72993044 protein_coding
  ENSMUST00000108485 Atp2a3-202 72961169-72993043 protein_coding
  ENSMUST00000108486 Atp2a3-001 72961169-72993044 protein_coding
  ENSMUST00000135234 Atp2a3-004 72982097-72983545 processed_transcript
  ENSMUST00000149493 Atp2a3-003 72961290-72970760 retained_intron
  ENSMUST00000163326 Atp2a3-203 72961169-72993043 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021142ENSMUST00000108484ENSMUST00000108485ENSMUST00000108486ENSMUST00000163326
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021142 21.652±3.87 4.381±0.92 10.870±2.88 0.860±0.62 21.376±9.80 246.939±26.02 4.163±1.63 9.653±0.77 3.048±2.40 106.412±9.56 1.580±0.60 8.384±4.25 5.018±3.69 0.681±0.29
ENSMUST00000108484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.207±0.00 N/A N/A
ENSMUST00000108485 N/A N/A N/A 0.395±0.25 8.937±3.22 98.942±23.05 N/A 1.810±0.00 1.593±0.72 N/A 0.744±0.27 2.054±0.92 3.205±1.48 0.430±0.19
ENSMUST00000108486 N/A N/A N/A N/A N/A N/A N/A N/A 0.249±0.00 N/A N/A 1.062±0.00 N/A N/A
ENSMUST00000163326 4.869±0.00 1.991±0.27 1.679±0.00 N/A N/A N/A N/A N/A 0.746±0.09 N/A N/A 2.700±1.06 3.461±2.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KA CIL_0003KA_0002 CGP 11:72796226-72993044

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005388 IEA calcium-transporting ATPase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016529 IEA sarcoplasmic reticulum
GO:0046872 IEA metal ion binding
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060978 atp2a3 ATPase, Ca++ transporting, ubiquitous protein_coding Danio_rerio
ENSG00000074370 ATP2A3 ATPase, Ca++ transporting, ubiquitous protein_coding Homo_sapiens

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