C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: netrin 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000074527 NTN4 9606 - 12:95657807-95791152 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343702 NTN4-001 95657807-95790758 protein_coding
  ENST00000344911 NTN4-003 95657807-95790764 protein_coding
  ENST00000538383 NTN4-002 95658988-95791152 protein_coding
  ENST00000547980 NTN4-005 95738089-95789948 protein_coding
  ENST00000550074 NTN4-006 95663397-95665859 processed_transcript
  ENST00000552603 NTN4-007 95713297-95739995 processed_transcript
  ENST00000553059 NTN4-004 95659086-95790309 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343702ENST00000344911ENST00000538383ENST00000553059
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343702 2.979±0.00 1.354±0.00 5.719±0.00 1.361±0.18 3.592±1.56 3.233±2.79 7.859±5.99 44.366±0.00 6.999±6.46 8.707±3.92 1.073±0.65 2.959±3.20 4.000±2.29 1.643±0.25
ENST00000344911 4.393±0.00 2.428±0.00 N/A 2.414±0.00 N/A 2.199±0.00 N/A 2.310±0.00 N/A 5.298±0.00 N/A 10.124±3.10 2.728±0.00 7.222±0.00
ENST00000538383 N/A N/A 6.981±0.00 N/A 7.475±0.00 1.253±0.00 1.426±0.00 3.857±0.00 3.673±0.00 8.972±0.00 0.695±0.00 2.218±0.00 N/A N/A
ENST00000553059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.506±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Y3 CIL_0000Y3_0002 CGP 12:95657807-95903828

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005604 IEA basement membrane
GO:0005886 TAS plasma membrane
GO:0007411 TAS axon guidance
GO:0016322 IEA neuron remodeling
GO:0030198 TAS extracellular matrix organization
GO:0043237 IEA laminin-1 binding
GO:0060668 IEA regulation of branching involved in salivary gland morphogenesis by extracellular matrix-epithelial cell signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087671 ntn4 netrin 4 protein_coding Danio_rerio
ENSMUSG00000020019 Ntn4 netrin 4 protein_coding Mus_musculus

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