C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000Y3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000087671-ENSDARG00000036570 CGP 7955 Zv9_NA880:4250-23231
GeneTranscriptPositionBiotype
ENSDARG00000036570 (snrpf)
small nuclear ribonucleoprotein polypeptide F 		ENSDART00000053129 (snrpf-201) 20080-23231 protein_coding
ENSDARG00000087671 (ntn4)
netrin 4 		ENSDART00000121986 (ntn4-201) 4250-13867 protein_coding
ENSDART00000130367 (ntn4-202) 4250-13858 protein_coding
CIL_0000Y3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000074527-ENSG00000139343 CGP 9606 12:95657807-95903828
GeneTranscriptPositionBiotype
ENSG00000074527 (NTN4)
netrin 4 		ENST00000343702 (NTN4-001) 95657807-95790758 protein_coding
ENST00000344911 (NTN4-003) 95657807-95790764 protein_coding
ENST00000538383 (NTN4-002) 95658988-95791152 protein_coding
ENST00000547980 (NTN4-005) 95738089-95789948 protein_coding
ENST00000550074 (NTN4-006) 95663397-95665859 processed_transcript
ENST00000552603 (NTN4-007) 95713297-95739995 processed_transcript
ENST00000553059 (NTN4-004) 95659086-95790309 protein_coding
ENSG00000139343 (SNRPF)
small nuclear ribonucleoprotein polypeptide F 		ENST00000266735 (SNRPF-001) 95858928-95867053 protein_coding
ENST00000549580 (SNRPF-005) 95865079-95866451 retained_intron
ENST00000551316 (SNRPF-002) 95858964-95861841 retained_intron
ENST00000552085 (SNRPF-004) 95858969-95903828 protein_coding
ENST00000553192 (SNRPF-003) 95858965-95880001 protein_coding
ENSG00000165972 (CCDC38)
coiled-coil domain containing 38 		ENST00000344280 (CCDC38-001) 95867049-95942974 protein_coding
ENST00000546386 (CCDC38-002) 95933185-95942635 protein_coding
ENST00000546803 (CCDC38-004) 95918880-95942608 nonsense_mediated_decay
ENST00000546816 (CCDC38-009) 95867048-95869802 retained_intron
ENST00000546947 (CCDC38-006) 95917127-95942599 protein_coding
ENST00000548771 (CCDC38-007) 95896518-95898743 retained_intron
ENST00000549752 (CCDC38-005) 95918942-95942601 processed_transcript
ENST00000549876 (CCDC38-008) 95867048-95879671 nonsense_mediated_decay
ENSG00000199506 (RNU6-247P)
RNA, U6 small nuclear 247, pseudogene 		ENST00000362636 (RNU6-247P-201) 95792529-95792635 snRNA
ENSG00000257150 (PGAM1P5)
phosphoglycerate mutase 1 pseudogene 5 		ENST00000548011 (PGAM1P5-001) 95672305-95673068 transcribed_processed_pseudogene
ENST00000552554 (PGAM1P5-002) 95649255-95673999 processed_transcript
ENSG00000258292 (RP11-536G4.1)
 ENST00000553095 (RP11-536G4.1-001) 95803097-95823307 lincRNA
ENSG00000258343 (RP11-536G4.2)
 ENST00000551893 (RP11-536G4.2-002) 95858237-95858798 antisense
ENST00000553163 (RP11-536G4.2-003) 95858237-95858693 retained_intron
ENST00000553194 (RP11-536G4.2-001) 95795345-95858839 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000Y3_0001ENSDARG00000036570ENSDART00000053129ENSDARG00000087671ENSDART00000121986ENSDART00000130367CIL_0000Y3_0002ENSG00000074527ENST00000343702ENST00000344911ENST00000538383ENST00000547980ENST00000550074ENST00000552603ENST00000553059ENSG00000139343ENST00000266735ENST00000549580ENST00000551316ENST00000552085ENST00000553192ENSG00000165972ENST00000344280ENST00000546386ENST00000546803ENST00000546816ENST00000546947ENST00000548771ENST00000549752ENST00000549876ENSG00000199506ENST00000362636ENSG00000257150ENST00000548011ENST00000552554ENSG00000258292ENST00000553095ENSG00000258343ENST00000551893ENST00000553163ENST00000553194
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000Y3_0001ENSDARG00000036570ENSDART00000053129ENSDARG00000087671ENSDART00000121986CIL_0000Y3_0002ENSG00000074527ENST00000343702ENST00000344911ENST00000538383ENST00000553059ENSG00000139343ENST00000266735ENST00000549580ENST00000551316ENST00000553192ENSG00000165972ENST00000344280ENSG00000199506ENST00000362636ENSG00000257150ENST00000548011ENST00000552554ENSG00000258292ENST00000553095ENSG00000258343ENST00000551893ENST00000553163ENST00000553194
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036570 ENSDART00000053129 N/A N/A N/A 12.533±8.94 N/A N/A 33.257±29.40 50.872±3.39 6.921±0.00 N/A 21.251±0.00 N/A N/A N/A
ENSDARG00000087671 ENSDART00000121986 N/A N/A N/A 16.305±3.42 N/A N/A 0.516±0.29 4.221±0.00 0.324±0.00 N/A 1.354±0.00 N/A N/A N/A
ENSDART00000130367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000074527 ENST00000343702 2.979±0.00 1.354±0.00 5.719±0.00 1.361±0.18 3.592±1.56 3.233±2.79 7.859±5.99 44.366±0.00 6.999±6.46 8.707±3.92 1.073±0.65 2.959±3.20 4.000±2.29 1.643±0.25
ENST00000344911 4.393±0.00 2.428±0.00 N/A 2.414±0.00 N/A 2.199±0.00 N/A 2.310±0.00 N/A 5.298±0.00 N/A 10.124±3.10 2.728±0.00 7.222±0.00
ENST00000538383 N/A N/A 6.981±0.00 N/A 7.475±0.00 1.253±0.00 1.426±0.00 3.857±0.00 3.673±0.00 8.972±0.00 0.695±0.00 2.218±0.00 N/A N/A
ENST00000547980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.506±0.00 N/A N/A N/A
ENSG00000139343 ENST00000266735 6.630±0.00 9.218±0.00 0.873±0.00 4.503±0.01 3.037±1.09 3.768±0.59 2.316±1.14 4.224±0.56 5.336±1.36 3.199±1.50 1.388±0.35 34.259±41.17 26.142±19.61 23.657±14.63
ENST00000549580 N/A 3.135±0.00 N/A 1.889±0.00 N/A N/A N/A 1.789±0.00 N/A N/A N/A N/A N/A N/A
ENST00000551316 N/A N/A N/A N/A 1.340±0.00 N/A 0.298±0.00 2.477±0.00 0.755±0.00 N/A N/A 1.346±0.00 N/A N/A
ENST00000552085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553192 8.369±0.00 14.740±0.00 N/A 3.190±0.00 8.425±0.00 9.557±0.00 N/A 6.228±0.00 6.154±0.00 5.136±0.00 1.427±0.00 N/A N/A 11.002±0.00
ENSG00000165972 ENST00000344280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.446±5.89
ENST00000546386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199506 ENST00000362636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.407±0.07
ENSG00000257150 ENST00000548011 N/A N/A 1.488±0.00 N/A 0.098±0.00 0.113±0.00 N/A 0.080±0.00 0.007±0.00 N/A N/A 0.848±0.00 N/A N/A
ENST00000552554 0.047±0.00 0.096±0.00 0.640±0.00 0.104±0.00 0.092±0.00 0.365±0.33 0.245±0.04 0.185±0.00 0.219±0.20 N/A 0.042±0.03 0.033±0.02 0.040±0.03 0.203±0.04
ENSG00000258292 ENST00000553095 N/A N/A N/A N/A N/A N/A 0.077±0.00 N/A N/A N/A N/A 0.082±0.00 0.102±0.01 0.053±0.00
ENSG00000258343 ENST00000551893 N/A N/A 0.210±0.00 N/A N/A 0.058±0.00 N/A N/A N/A 0.730±0.00 N/A N/A N/A 1.460±1.17
ENST00000553163 N/A N/A N/A 0.114±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553194 N/A N/A N/A 0.027±0.00 N/A N/A N/A 0.079±0.00 N/A 0.251±0.00 0.186±0.00 0.208±0.00 N/A 1.311±0.64

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