C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: regulating synaptic membrane exocytosis 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000079841 RIMS1 9606 + 6:71886703-72403143 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264839 RIMS1-003 71887024-72403143 protein_coding
  ENST00000370419 RIMS1-001 71886703-72264004 retained_intron
  ENST00000370420 RIMS1-004 72250414-72400714 protein_coding
  ENST00000401910 RIMS1-013 72212811-72400905 protein_coding
  ENST00000414192 RIMS1-009 72366730-72401651 protein_coding
  ENST00000425662 RIMS1-015 72216442-72400890 protein_coding
  ENST00000431478 RIMS1-021 72365774-72401651 processed_transcript
  ENST00000453976 RIMS1-016 72216542-72398999 protein_coding
  ENST00000463023 RIMS1-020 72260699-72401260 retained_intron
  ENST00000491071 RIMS1-010 71886703-72400994 protein_coding
  ENST00000517433 RIMS1-012 72182752-72401088 protein_coding
  ENST00000517827 RIMS1-018 72216760-72400869 protein_coding
  ENST00000517960 RIMS1-005 71887024-72400714 protein_coding
  ENST00000518273 RIMS1-006 71887024-72400714 protein_coding
  ENST00000520567 RIMS1-007 71887024-72401127 protein_coding
  ENST00000521978 RIMS1-011 71887024-72400714 protein_coding
  ENST00000522211 RIMS1-019 72252791-72401167 protein_coding
  ENST00000522291 RIMS1-008 71887024-72400714 protein_coding
  ENST00000523963 RIMS1-014 72212893-72401127 protein_coding
  ENST00000524197 RIMS1-017 72216760-72266313 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264839ENST00000370419ENST00000370420ENST00000414192ENST00000425662ENST00000453976ENST00000463023ENST00000517433ENST00000517960ENST00000520567ENST00000521978ENST00000522211ENST00000522291
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264839 N/A 0.019±0.00 N/A N/A N/A 0.021±0.00 N/A 0.002±0.00 N/A N/A N/A 0.006±0.00 0.031±0.00 0.546±0.00
ENST00000370419 0.008±0.00 0.023±0.00 N/A N/A N/A 0.017±0.00 N/A 0.010±0.00 0.004±0.00 N/A N/A 0.003±0.00 0.008±0.00 N/A
ENST00000370420 N/A N/A 0.027±0.00 17.920±0.00 N/A 0.171±0.00 0.208±0.00 N/A N/A 2.618±0.00 N/A 0.208±0.00 0.035±0.00 N/A
ENST00000414192 N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.567±0.00
ENST00000453976 N/A 0.102±0.00 N/A 7.598±0.00 N/A N/A 0.045±0.00 N/A 0.732±0.00 2.230±0.00 0.196±0.00 N/A N/A N/A
ENST00000463023 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.263±0.00 N/A 0.028±0.00 N/A N/A
ENST00000517433 N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A 0.125±0.00 N/A 0.119±0.00 N/A 0.943±0.19
ENST00000517960 N/A N/A N/A 5.167±0.00 N/A N/A 0.096±0.00 0.045±0.00 N/A N/A N/A N/A N/A N/A
ENST00000520567 N/A N/A N/A N/A N/A 0.178±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521978 N/A N/A N/A N/A 0.027±0.00 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522211 N/A N/A 0.077±0.00 N/A 0.407±0.00 N/A 0.086±0.00 0.033±0.00 0.571±0.00 N/A N/A 0.018±0.01 N/A N/A
ENST00000522291 N/A N/A N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005083 TAS small GTPase regulator activity
GO:0005515 IPI:IEA protein binding
GO:0005886 ISS plasma membrane
GO:0006461 IDA protein complex assembly
GO:0006886 IEA intracellular protein transport
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0007601 IEA visual perception
GO:0010628 ISS positive regulation of gene expression
GO:0014047 TAS glutamate secretion
GO:0016079 TAS synaptic vesicle exocytosis
GO:0017137 ISS:IEA Rab GTPase binding
GO:0017156 TAS calcium ion-dependent exocytosis
GO:0030054 IEA cell junction
GO:0042391 IEA regulation of membrane potential
GO:0042734 ISS presynaptic membrane
GO:0044325 IEA ion channel binding
GO:0044822 IDA poly(A) RNA binding
GO:0045055 NAS regulated secretory pathway
GO:0045202 IEA synapse
GO:0046872 IEA metal ion binding
GO:0046903 NAS secretion
GO:0046928 TAS regulation of neurotransmitter secretion
GO:0048169 IEA regulation of long-term neuronal synaptic plasticity
GO:0048786 TAS presynaptic active zone
GO:0048791 IEA calcium ion-dependent exocytosis of neurotransmitter
GO:0050790 TAS regulation of catalytic activity
GO:0050896 IEA response to stimulus
GO:0061025 NAS membrane fusion
GO:0097151 ISS positive regulation of inhibitory postsynaptic membrane potential
GO:2000463 ISS positive regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074680 rims1a regulating synaptic membrane exocytosis 1a protein_coding Danio_rerio
ENSMUSG00000041670 Rims1 regulating synaptic membrane exocytosis 1 protein_coding Mus_musculus

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