C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulating synaptic membrane exocytosis 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370420 RIMS1-004 ENSG00000079841 9606 + 6:72250414-72400714 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartLungOvaryPlacentaENST00000370420
Transcript ID Bladder Brain Colon Heart Lung Ovary Placenta
ENST00000370420 0.027±0.00 17.920±0.00 0.171±0.00 0.208±0.00 2.618±0.00 0.208±0.00 0.035±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005083 TAS small GTPase regulator activity
GO:0005515 IPI:IEA protein binding
GO:0005886 ISS plasma membrane
GO:0006461 IDA protein complex assembly
GO:0006886 IEA intracellular protein transport
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0007601 IEA visual perception
GO:0010628 ISS positive regulation of gene expression
GO:0014047 TAS glutamate secretion
GO:0016079 TAS synaptic vesicle exocytosis
GO:0017137 ISS Rab GTPase binding
GO:0017156 TAS calcium ion-dependent exocytosis
GO:0030054 IEA cell junction
GO:0042734 ISS presynaptic membrane
GO:0044822 IDA poly(A) RNA binding
GO:0045055 NAS regulated secretory pathway
GO:0046872 IEA metal ion binding
GO:0046903 NAS secretion
GO:0046928 TAS regulation of neurotransmitter secretion
GO:0048786 TAS presynaptic active zone
GO:0050790 TAS regulation of catalytic activity
GO:0050896 IEA response to stimulus
GO:0061025 NAS membrane fusion
GO:0097151 ISS positive regulation of inhibitory postsynaptic membrane potential
GO:2000463 ISS positive regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115273 Rims1-205 protein_coding Mus_musculus 0 2366
ENSMUST00000081544 Rims1-201 protein_coding Mus_musculus 0 1683
ENSMUST00000097809 Rims1-202 protein_coding Mus_musculus 0 1676
ENSMUST00000097810 Rims1-203 protein_coding Mus_musculus 0 1676
ENSMUST00000097811 Rims1-204 protein_coding Mus_musculus 0 1676
ENSMUST00000185942 Rims1-002 protein_coding Mus_musculus 0 1676
ENSMUST00000164877 Rims1-206 protein_coding Mus_musculus 0 861
ENSMUST00000097808 Rims1-001 protein_coding Mus_musculus 0.000000000009 77

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