C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gem (nuclear organelle) associated protein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000082516 GEMIN5 9606 - 5:154887416-154938209 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000285873 GEMIN5-001 154887416-154938209 protein_coding
  ENST00000522075 GEMIN5-003 154891434-154892650 retained_intron
  ENST00000523355 GEMIN5-002 154927386-154931716 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000285873ENST00000523355
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000285873 3.159±0.00 2.465±0.00 1.074±0.00 1.503±0.45 2.031±1.17 1.726±0.91 2.296±1.17 1.476±0.49 1.455±0.26 1.253±0.00 5.466±0.00 2.330±1.31 1.860±0.49 3.510±0.37
ENST00000523355 N/A N/A N/A N/A 2.455±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088D CIL_00088D_0001 VISTA 5:154298500-154906275
CIL_00023V CIL_00023V_0001 CGP 5:154857553-154938209
CIL_00023Y CIL_00023Y_0001 CGP 5:154887416-154969411

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000387 TAS spliceosomal snRNP assembly
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0006461 TAS protein complex assembly
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016604 IDA nuclear body
GO:0017069 IDA snRNA binding
GO:0032797 IDA SMN complex
GO:0034660 TAS ncRNA metabolic process
GO:0034719 IDA SMN-Sm protein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079257 gemin5 gem (nuclear organelle) associated protein 5 protein_coding Danio_rerio
ENSMUSG00000037275 Gemin5 gem (nuclear organelle) associated protein 5 protein_coding Mus_musculus

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