C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gem (nuclear organelle) associated protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000285873 GEMIN5-001 ENSG00000082516 9606 - 5:154887416-154938209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000285873
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000285873 3.159±0.00 2.465±0.00 1.074±0.00 1.503±0.45 2.031±1.17 1.726±0.91 2.296±1.17 1.476±0.49 1.455±0.26 1.253±0.00 5.466±0.00 2.330±1.31 1.860±0.49 3.510±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088D CIL_00088D_0001 VISTA 5:154298500-154906275
CIL_00023V CIL_00023V_0001 CGP 5:154857553-154938209
CIL_00023Y CIL_00023Y_0001 CGP 5:154887416-154969411

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 TAS spliceosomal snRNP assembly
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0006461 TAS protein complex assembly
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016604 IDA nuclear body
GO:0017069 IDA snRNA binding
GO:0032797 IDA SMN complex
GO:0034660 TAS ncRNA metabolic process
GO:0034719 IDA SMN-Sm protein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102711 Gemin5-002 protein_coding Mus_musculus 0 3696
ENSMUST00000172035 Gemin5-201 protein_coding Mus_musculus 0 3687
ENSMUST00000035604 Gemin5-001 protein_coding Mus_musculus 0 3687
ENSMUST00000134953 Gemin5-004 protein_coding Mus_musculus 0 549

Loading