C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gem (nuclear organelle) associated protein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037275 Gemin5 10090 - 11:58120002-58168539 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035604 Gemin5-001 58121290-58168539 protein_coding
  ENSMUST00000102711 Gemin5-002 58121290-58168539 protein_coding
  ENSMUST00000134733 Gemin5-003 58136923-58139473 processed_transcript
  ENSMUST00000134953 Gemin5-004 58155029-58160768 protein_coding
  ENSMUST00000172035 Gemin5-201 58120002-58168539 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035604ENSMUST00000102711ENSMUST00000172035
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035604 1.857±0.80 3.110±1.44 N/A 0.797±0.00 1.881±0.84 1.770±1.03 0.816±0.30 0.986±0.33 1.293±1.03 1.860±0.70 0.894±0.51 7.070±3.57 3.093±2.33 7.649±1.79
ENSMUST00000102711 1.360±0.48 2.740±1.20 1.063±0.04 2.081±0.49 1.916±0.83 2.444±0.74 0.524±0.22 1.325±0.66 1.370±0.71 1.982±0.44 0.395±0.01 4.654±3.06 2.094±0.58 9.465±2.49
ENSMUST00000172035 1.797±0.81 1.262±0.41 2.195±0.81 3.616±1.49 1.185±0.46 0.998±0.29 0.292±0.04 1.107±0.16 1.563±1.39 0.810±0.28 0.918±0.38 2.550±0.82 2.125±0.84 2.744±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099I CIL_00099I_0002 VISTA 11:57547462-58147793
CIL_00088D CIL_00088D_0002 VISTA 11:57627590-58231336
CIL_00023V CIL_00023V_0002 CGP 11:58104153-58168539
CIL_00023Y CIL_00023Y_0002 CGP 11:58120002-58179565

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000387 ISS spliceosomal snRNP assembly
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0016020 IEA membrane
GO:0016604 IEA nuclear body
GO:0017069 ISS snRNA binding
GO:0032797 ISS SMN complex
GO:0034719 ISS SMN-Sm protein complex
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079257 gemin5 gem (nuclear organelle) associated protein 5 protein_coding Danio_rerio
ENSG00000082516 GEMIN5 gem (nuclear organelle) associated protein 5 protein_coding Homo_sapiens

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