C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transportin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000083312 TNPO1 9606 + 5:72816312-72916733 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337273 TNPO1-001 72816312-72916733 protein_coding
  ENST00000503084 TNPO1-005 72900874-72908913 retained_intron
  ENST00000505082 TNPO1-004 72872668-72887210 processed_transcript
  ENST00000506351 TNPO1-006 72848184-72908951 protein_coding
  ENST00000506528 TNPO1-008 72848385-72872720 processed_transcript
  ENST00000508762 TNPO1-003 72871747-72883099 processed_transcript
  ENST00000509030 TNPO1-007 72848385-72862396 processed_transcript
  ENST00000511754 TNPO1-009 72848385-72865731 processed_transcript
  ENST00000513944 TNPO1-002 72848170-72861915 processed_transcript
  ENST00000515483 TNPO1-010 72816624-72855916 processed_transcript
  ENST00000518279 TNPO1-012 72816793-72865693 processed_transcript
  ENST00000520850 TNPO1-011 72816649-72883097 nonsense_mediated_decay
  ENST00000523768 TNPO1-013 72816672-72905429 protein_coding
  ENST00000605210 TNPO1-014 72893676-72905580 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000337273ENST00000505082ENST00000506351ENST00000523768
Transcript ID Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000337273 1.048±0.00 N/A 0.766±0.00 N/A 8.123±0.00 N/A 3.381±0.94 3.715±0.05 6.437±0.00
ENST00000505082 N/A N/A N/A N/A N/A N/A N/A N/A 18.820±0.00
ENST00000506351 N/A 3.931±0.00 1.497±0.00 3.466±1.17 7.836±0.00 6.217±0.00 N/A 3.303±0.00 9.685±0.00
ENST00000523768 N/A N/A N/A N/A N/A N/A N/A N/A 8.479±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000060 TAS protein import into nucleus, translocation
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 TAS cytoplasm
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0008139 TAS nuclear localization sequence binding
GO:0008536 IEA Ran GTPase binding
GO:0010467 TAS gene expression
GO:0016032 IEA viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035390 tnpo1 transportin 1 protein_coding Danio_rerio
ENSDARG00000086086 TNPO1 (2 of 2) transportin 1 protein_coding Danio_rerio
ENSMUSG00000009470 Tnpo1 transportin 1 protein_coding Mus_musculus

Loading