C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transportin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009470 Tnpo1 10090 - 13:98839019-98926384 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000109399 Tnpo1-002 98839019-98891040 protein_coding
  ENSMUST00000109401 Tnpo1-001 98839019-98926384 protein_coding
  ENSMUST00000179271 Tnpo1-004 98875642-98891014 protein_coding
  ENSMUST00000179301 Tnpo1-003 98849223-98890998 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109399ENSMUST00000109401ENSMUST00000179301
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109399 5.298±0.51 2.105±0.00 2.471±0.00 N/A 2.425±0.37 1.948±0.51 1.313±0.06 2.421±0.00 2.449±1.03 2.148±0.07 N/A 5.504±1.58 N/A N/A
ENSMUST00000109401 15.144±2.32 16.876±1.75 13.147±1.57 17.688±11.36 12.273±1.02 9.308±1.04 7.379±0.30 14.853±0.73 8.871±1.76 14.020±1.52 2.181±0.70 16.100±5.86 13.678±6.45 5.660±2.98
ENSMUST00000179301 N/A N/A N/A N/A N/A 2.531±0.19 N/A N/A 3.958±0.00 N/A N/A 11.364±0.05 11.657±5.89 23.798±2.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KX CIL_0007KX_0002 UCNEbase 13:98476724-98844627

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006886 IEA intracellular protein transport
GO:0008536 IEA Ran GTPase binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035390 tnpo1 transportin 1 protein_coding Danio_rerio
ENSDARG00000086086 TNPO1 (2 of 2) transportin 1 protein_coding Danio_rerio
ENSG00000083312 TNPO1 transportin 1 protein_coding Homo_sapiens

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