C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transportin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506351 TNPO1-006 ENSG00000083312 9606 + 5:72848184-72908951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverLungPlacentaTestisENST00000506351
Transcript ID Breast Heart Kidney Liver Lung Placenta Testis
ENST00000506351 3.931±0.00 1.497±0.00 3.466±1.17 7.836±0.00 6.217±0.00 3.303±0.00 9.685±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000060 TAS protein import into nucleus, translocation
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 TAS cytoplasm
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0008139 TAS nuclear localization sequence binding
GO:0008536 IEA Ran GTPase binding
GO:0010467 TAS gene expression
GO:0016032 IEA viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109401 Tnpo1-001 protein_coding Mus_musculus 0 4037
ENSMUST00000109399 Tnpo1-002 protein_coding Mus_musculus 0 4037
ENSMUST00000179301 Tnpo1-003 protein_coding Mus_musculus 0 3157
ENSMUST00000159889 Gm6493-001 unprocessed_pseudogene Mus_musculus 0 2071
ENSDART00000051278 tnpo1-201 protein_coding Danio_rerio 0 1369
ENSMUST00000179271 Tnpo1-004 protein_coding Mus_musculus 0 743

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