C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ficolin (collagen/fibrinogen domain containing) 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000085265 FCN1 9606 - 9:134905890-134917963 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000371806 FCN1-001 134909585-134917963 protein_coding
  ENST00000616356 FCN1-201 134905890-134917877 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371806ENST00000616356
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371806 14.899±0.00 8.387±0.00 N/A 0.227±0.00 2.444±1.41 0.808±0.08 2.676±0.00 0.981±0.68 1.199±0.94 16.906±14.29 0.098±0.00 1.458±1.17 18.566±12.43 1.055±0.85
ENST00000616356 N/A N/A 0.084±0.00 N/A N/A 0.049±0.00 0.005±0.00 N/A 0.129±0.00 0.589±0.11 0.006±0.00 0.036±0.00 0.936±0.60 0.055±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ET CIL_0001ET_0001 CGP 9:134905890-135121179

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001664 IPI G-protein coupled receptor binding
GO:0001867 TAS complement activation, lectin pathway
GO:0002752 IMP cell surface pattern recognition receptor signaling pathway
GO:0003823 TAS antigen binding
GO:0005509 TAS calcium ion binding
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0006956 TAS complement activation
GO:0007186 IDA G-protein coupled receptor signaling pathway
GO:0008228 TAS opsonization
GO:0008329 IMP signaling pattern recognition receptor activity
GO:0030246 IEA carbohydrate binding
GO:0031232 IDA extrinsic component of external side of plasma membrane
GO:0045087 TAS innate immune response
GO:2000484 IMP positive regulation of interleukin-8 secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000026835 Fcnb ficolin B protein_coding Mus_musculus

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