C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysophosphatidylcholine acyltransferase 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000087253 LPCAT2 9606 + 16:55508998-55586670 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262134 LPCAT2-001 55508998-55586670 protein_coding
  ENST00000562299 LPCAT2-008 55579018-55583237 retained_intron
  ENST00000563095 LPCAT2-005 55545485-55574729 retained_intron
  ENST00000564084 LPCAT2-004 55528493-55542028 protein_coding
  ENST00000565056 LPCAT2-007 55556923-55583012 processed_transcript
  ENST00000566375 LPCAT2-006 55549306-55551333 retained_intron
  ENST00000566911 LPCAT2-003 55509072-55526058 retained_intron
  ENST00000566915 LPCAT2-002 55532039-55586666 retained_intron
  ENST00000615823 LPCAT2-201 55532039-55586662 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262134ENST00000562299ENST00000563095ENST00000564084ENST00000566915ENST00000615823
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262134 5.580±0.00 1.973±0.00 1.080±0.00 2.624±1.13 2.082±0.05 2.664±2.44 0.530±0.20 4.223±0.00 0.488±0.15 1.281±0.89 0.880±0.00 2.175±1.98 2.479±0.64 2.635±2.15
ENST00000562299 N/A N/A N/A N/A N/A N/A N/A 0.754±0.00 N/A N/A N/A N/A N/A N/A
ENST00000563095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.693±0.00 N/A N/A
ENST00000564084 N/A N/A N/A N/A N/A N/A N/A 1.019±0.00 N/A N/A N/A 0.641±0.00 N/A 0.976±0.00
ENST00000566915 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.434±0.00 N/A N/A N/A N/A
ENST00000615823 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.442±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WY CIL_0007WY_0001 VISTA 16:54995377-55596848
CIL_000988 CIL_000988_0001 VISTA 16:55084120-55684969
CIL_00098D CIL_00098D_0001 VISTA 16:55090504-55691826
CIL_0005P6 CIL_0005P6_0001 CGP 16:55389700-55586670
CIL_0000PT CIL_0000PT_0001 CGP 16:55508998-55586670

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003841 IEA 1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0005509 IEA calcium ion binding
GO:0005783 ISS endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005795 ISS Golgi stack
GO:0005811 IDA lipid particle
GO:0006644 TAS phospholipid metabolic process
GO:0006663 ISS platelet activating factor biosynthetic process
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0036151 IDA phosphatidylcholine acyl-chain remodeling
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0047184 ISS 1-acylglycerophosphocholine O-acyltransferase activity
GO:0047192 ISS 1-alkylglycerophosphocholine O-acetyltransferase activity
GO:0061024 ISS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053010 lpcat2 lysophosphatidylcholine acyltransferase 2 protein_coding Danio_rerio
ENSMUSG00000033192 Lpcat2 lysophosphatidylcholine acyltransferase 2 protein_coding Mus_musculus

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