C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysophosphatidylcholine acyltransferase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262134 LPCAT2-001 ENSG00000087253 9606 + 16:55508998-55586670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262134 5.580±0.00 1.973±0.00 1.080±0.00 2.624±1.13 2.082±0.05 2.664±2.44 0.530±0.20 4.223±0.00 0.488±0.15 1.281±0.89 0.880±0.00 2.175±1.98 2.479±0.64 2.635±2.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WY CIL_0007WY_0001 VISTA 16:54995377-55596848
CIL_000988 CIL_000988_0001 VISTA 16:55084120-55684969
CIL_00098D CIL_00098D_0001 VISTA 16:55090504-55691826
CIL_0005P6 CIL_0005P6_0001 CGP 16:55389700-55586670
CIL_0000PT CIL_0000PT_0001 CGP 16:55508998-55586670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003841 IEA 1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0005509 IEA calcium ion binding
GO:0005783 ISS endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005795 ISS Golgi stack
GO:0005811 IDA lipid particle
GO:0006644 TAS phospholipid metabolic process
GO:0006663 ISS platelet activating factor biosynthetic process
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0036151 IDA phosphatidylcholine acyl-chain remodeling
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0047184 ISS 1-acylglycerophosphocholine O-acyltransferase activity
GO:0047192 ISS 1-alkylglycerophosphocholine O-acetyltransferase activity
GO:0061024 ISS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046290 Lpcat2-001 protein_coding Mus_musculus 0 1637
ENSMUST00000130471 Lpcat2-002 processed_transcript Mus_musculus 0 392

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