C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TDP-glucose 4,6-dehydratase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000088451 TGDS 9606 - 13:94574051-94596257 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261296 TGDS-001 94574051-94596257 protein_coding
  ENST00000470480 TGDS-003 94579286-94581189 retained_intron
  ENST00000498294 TGDS-002 94578730-94596242 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261296ENST00000498294
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261296 2.110±0.00 0.547±0.00 1.045±0.15 2.552±0.26 1.333±0.38 0.610±0.01 1.614±1.00 0.541±0.22 2.150±0.07 0.290±0.00 4.623±3.11 2.524±0.52 2.818±0.00
ENST00000498294 N/A N/A 0.673±0.00 N/A N/A N/A N/A 1.835±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000890 CIL_000890_0001 VISTA 13:94361598-94963187
CIL_0008KC CIL_0008KC_0001 VISTA 13:94406009-95007763
CIL_0000E7 CIL_0000E7_0001 CGP 13:94436808-94596257
CIL_0000E6 CIL_0000E6_0001 CGP 13:94574051-94634645

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0003854 IEA 3-beta-hydroxy-delta5-steroid dehydrogenase activity
GO:0006694 IEA steroid biosynthetic process
GO:0008460 IEA dTDP-glucose 4,6-dehydratase activity
GO:0009058 IEA biosynthetic process
GO:0009225 IEA nucleotide-sugar metabolic process
GO:0016616 IEA oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0050662 IEA coenzyme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015622 tgds TDP-glucose 4,6-dehydratase protein_coding Danio_rerio
ENSMUSG00000022130 Tgds TDP-glucose 4,6-dehydratase protein_coding Mus_musculus

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