C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000890_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs796 VISTA 9606 13:94361598-94963187
GeneTranscriptPositionBiotype
ENSG00000080166 (DCT)
dopachrome tautomerase 		ENST00000377028 (DCT-001) 94436808-94479669 protein_coding
ENST00000446125 (DCT-201) 94439589-94479682 protein_coding
ENST00000472871 (DCT-002) 94465457-94479669 retained_intron
ENST00000483392 (DCT-003) 94439487-94468770 nonsense_mediated_decay
ENST00000490854 (DCT-004) 94462121-94467955 processed_transcript
ENSG00000088451 (TGDS)
TDP-glucose 4,6-dehydratase 		ENST00000261296 (TGDS-001) 94574051-94596257 protein_coding
ENST00000470480 (TGDS-003) 94579286-94581189 retained_intron
ENST00000498294 (TGDS-002) 94578730-94596242 processed_transcript
ENSG00000125285 (SOX21)
SRY (sex determining region Y)-box 21 		ENST00000376945 (SOX21-001) 94709622-94712399 protein_coding
ENSG00000152749 (GPR180)
G protein-coupled receptor 180 		ENST00000376958 (GPR180-001) 94601903-94634645 protein_coding
ENSG00000183098 (GPC6)
glypican 6 		ENST00000377047 (GPC6-001) 93226842-94407401 protein_coding
ENST00000617456 (GPC6-201) 94286348-94403217 protein_coding
ENSG00000222129 (RNA5SP36)
RNA, 5S ribosomal pseudogene 36 		ENST00000410197 (RNA5SP36-201) 94651397-94651529 rRNA
ENSG00000227640 (SOX21-AS1)
SOX21 antisense RNA 1 (head to head) 		ENST00000438290 (SOX21-AS1-001) 94712716-94716246 lincRNA
ENSG00000235768 (BRD7P5)
bromodomain containing 7 pseudogene 5 		ENST00000299197 (BRD7P5-001) 94757451-94759272 processed_pseudogene
ENSG00000237924 (RPL21P112)
ribosomal protein L21 pseudogene 112 		ENST00000434403 (RPL21P112-001) 94760553-94761015 processed_pseudogene
ENSG00000238230 (LINC00391)
long intergenic non-protein coding RNA 391 		ENST00000433569 (LINC00391-001) 94699694-94702862 lincRNA
ENSG00000260962 (LINC00557)
long intergenic non-protein coding RNA 557 		ENST00000563184 (LINC00557-001) 94960041-94961319 lincRNA
ENSG00000274168 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000470538 (Metazoa_SRP.1-270) 94699223-94699502 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_000890_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs796 VISTA 10090 14:117893836-118495430
GeneTranscriptPositionBiotype
ENSMUSG00000022129 (Dct)
dopachrome tautomerase 		ENSMUST00000022725 (Dct-201) 118012792-118052246 protein_coding
ENSMUSG00000022130 (Tgds)
TDP-glucose 4,6-dehydratase 		ENSMUST00000022727 (Tgds-201) 118111911-118132765 protein_coding
ENSMUSG00000022131 (Gpr180)
G protein-coupled receptor 180 		ENSMUST00000022728 (Gpr180-201) 118137127-118164232 protein_coding
ENSMUSG00000032849 (Abcc4)
ATP-binding cassette, sub-family C (CFTR/MRP), member 4 		ENSMUST00000036554 (Abcc4-201) 118482692-118706219 protein_coding
ENSMUST00000166646 (Abcc4-202) 118482692-118706219 protein_coding
ENSMUSG00000058571 (Gpc6)
glypican 6 		ENSMUST00000078849 (Gpc6-001) 116925297-117979529 protein_coding
ENSMUST00000088483 (Gpc6-004) 116925430-117976544 protein_coding
ENSMUST00000123239 (Gpc6-003) 116925315-117627198 retained_intron
ENSMUST00000125435 (Gpc6-002) 116925531-117975406 protein_coding
ENSMUSG00000061517 (Sox21)
SRY (sex determining region Y)-box 21 		ENSMUST00000170662 (Sox21-001) 118233232-118237030 protein_coding
ENSMUSG00000090534 (Gm4675)
predicted gene 4675 		ENSMUST00000163396 (Gm4675-002) 118236880-118261199 processed_transcript
ENSMUST00000164755 (Gm4675-001) 118236232-118238759 processed_transcript
ENSMUST00000169262 (Gm4675-003) 118253716-118254258 processed_transcript
ENSMUSG00000092109 (Gm9376)
predicted gene 9376 		ENSMUST00000171107 (Gm9376-201) 118267158-118267768 protein_coding
ENSMUSG00000096997 (Gm26791)
predicted gene, 26791 		ENSMUST00000180942 (Gm26791-001) 118363732-118384768 lincRNA
ENSMUSG00000097358 (Gm26773)
predicted gene, 26773 		ENSMUST00000180772 (Gm26773-201) 118107831-118117100 lincRNA
ENSMUSG00000099911 (RP24-66N5.1)
RIKEN cDNA 1700044C05 gene 		ENSMUST00000186060 (RP24-66N5.1-001) 118365878-118398170 lincRNA

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000890_0001ENSG00000080166ENST00000377028ENST00000446125ENST00000472871ENST00000483392ENST00000490854ENSG00000088451ENST00000261296ENST00000470480ENST00000498294ENSG00000125285ENST00000376945ENSG00000152749ENST00000376958ENSG00000183098ENST00000377047ENST00000617456ENSG00000222129ENST00000410197ENSG00000227640ENST00000438290ENSG00000235768ENST00000299197ENSG00000237924ENST00000434403ENSG00000238230ENST00000433569ENSG00000260962ENST00000563184ENSG00000274168ENST00000470538CIL_000890_0002ENSMUSG00000022129ENSMUST00000022725ENSMUSG00000022130ENSMUST00000022727ENSMUSG00000022131ENSMUST00000022728ENSMUSG00000032849ENSMUST00000036554ENSMUST00000166646ENSMUSG00000058571ENSMUST00000078849ENSMUST00000088483ENSMUST00000123239ENSMUST00000125435ENSMUSG00000061517ENSMUST00000170662ENSMUSG00000090534ENSMUST00000163396ENSMUST00000164755ENSMUST00000169262ENSMUSG00000092109ENSMUST00000171107ENSMUSG00000096997ENSMUST00000180942ENSMUSG00000097358ENSMUST00000180772ENSMUSG00000099911ENSMUST00000186060
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000890_0001ENSG00000080166ENST00000377028ENST00000446125ENST00000472871ENST00000483392ENST00000490854ENSG00000088451ENST00000261296ENST00000498294ENSG00000125285ENST00000376945ENSG00000152749ENST00000376958ENSG00000183098ENST00000377047ENST00000617456ENSG00000222129ENST00000410197ENSG00000227640ENST00000438290ENSG00000235768ENST00000299197ENSG00000237924ENST00000434403ENSG00000238230ENST00000433569ENSG00000260962ENST00000563184ENSG00000274168ENST00000470538CIL_000890_0002ENSMUSG00000022129ENSMUST00000022725ENSMUSG00000022130ENSMUST00000022727ENSMUSG00000022131ENSMUST00000022728ENSMUSG00000032849ENSMUST00000036554ENSMUST00000166646ENSMUSG00000058571ENSMUST00000078849ENSMUST00000088483ENSMUST00000125435ENSMUSG00000061517ENSMUST00000170662ENSMUSG00000090534ENSMUST00000163396ENSMUST00000164755ENSMUSG00000092109ENSMUST00000171107ENSMUSG00000096997ENSMUST00000180942ENSMUSG00000097358ENSMUST00000180772ENSMUSG00000099911ENSMUST00000186060
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080166 ENST00000377028 N/A 0.040±0.00 N/A 0.237±0.08 0.029±0.00 0.040±0.00 N/A 0.046±0.04 N/A 0.103±0.06 0.032±0.00 0.094±0.05 0.008±0.00 0.128±0.00
ENST00000446125 N/A 0.052±0.00 0.204±0.00 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.115±0.00
ENST00000472871 N/A N/A N/A 0.159±0.00 0.008±0.00 0.092±0.00 0.044±0.00 N/A 0.058±0.00 N/A 0.110±0.00 N/A N/A N/A
ENST00000483392 N/A N/A N/A 0.150±0.00 0.243±0.00 0.028±0.00 N/A N/A 0.169±0.00 N/A N/A 0.128±0.00 N/A 0.296±0.09
ENST00000490854 N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A N/A
ENSG00000088451 ENST00000261296 2.110±0.00 0.547±0.00 N/A 1.045±0.15 2.552±0.26 1.333±0.38 0.610±0.01 1.614±1.00 0.541±0.22 2.150±0.07 0.290±0.00 4.623±3.11 2.524±0.52 2.818±0.00
ENST00000470480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498294 N/A N/A N/A 0.673±0.00 N/A N/A N/A N/A 1.835±0.00 N/A N/A N/A N/A N/A
ENSG00000125285 ENST00000376945 N/A N/A N/A 0.740±0.17 N/A N/A N/A N/A N/A 0.130±0.06 N/A 0.205±0.05 N/A 0.142±0.12
ENSG00000152749 ENST00000376958 2.074±0.00 1.052±0.00 0.771±0.00 1.365±0.61 2.369±0.77 0.947±0.12 0.681±0.05 1.036±0.00 1.677±0.00 1.205±0.70 0.471±0.33 1.733±0.96 0.786±0.17 0.731±0.30
ENSG00000183098 ENST00000377047 0.976±0.00 1.589±0.00 1.885±0.00 0.829±0.11 2.559±0.49 3.705±1.33 0.475±0.03 4.153±1.13 3.424±0.00 1.887±0.44 0.213±0.17 3.378±1.93 0.282±0.07 1.862±1.48
ENST00000617456 N/A N/A N/A N/A N/A N/A 0.524±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000222129 ENST00000410197 N/A N/A N/A N/A N/A N/A N/A 9.509±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000227640 ENST00000438290 N/A N/A N/A 0.873±0.07 N/A 0.009±0.00 0.006±0.00 N/A N/A 0.148±0.00 0.003±0.00 0.102±0.09 N/A 0.098±0.01
ENSG00000235768 ENST00000299197 N/A N/A N/A N/A 0.014±0.00 N/A 0.006±0.00 N/A N/A N/A N/A 0.015±0.00 0.008±0.00 0.120±0.10
ENSG00000237924 ENST00000434403 N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A 0.024±0.00 0.072±0.00 N/A 0.052±0.00 N/A 0.093±0.00
ENSG00000238230 ENST00000433569 N/A N/A N/A 0.122±0.09 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260962 ENST00000563184 N/A N/A N/A 0.062±0.00 N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A 0.023±0.00
ENSG00000274168 ENST00000470538 0.167±0.00 N/A N/A 0.304±0.18 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022129 ENSMUST00000022725 0.374±0.30 0.216±0.05 0.128±0.01 1.171±0.88 0.520±0.24 0.209±0.12 0.685±0.24 0.092±0.05 0.139±0.16 0.085±0.04 0.140±0.08 0.136±0.11 0.161±0.19 1.430±0.79
ENSMUSG00000022130 ENSMUST00000022727 6.543±0.59 3.652±1.57 3.879±0.33 1.267±0.30 3.857±1.02 4.473±0.93 2.603±0.41 4.529±1.06 6.321±2.54 4.282±0.33 1.160±0.24 4.934±1.36 7.648±2.60 1.543±0.61
ENSMUSG00000022131 ENSMUST00000022728 12.696±1.24 27.223±4.93 4.129±1.49 2.162±0.80 10.417±1.83 15.316±2.58 5.925±0.63 10.422±2.25 7.602±5.34 10.716±2.02 4.691±1.99 19.330±9.95 8.043±1.45 4.981±1.33
ENSMUSG00000032849 ENSMUST00000036554 4.024±1.88 3.168±0.70 16.431±6.98 0.494±0.04 2.254±0.42 2.943±0.21 2.231±0.30 12.108±3.75 0.820±0.40 3.079±0.58 2.119±0.57 3.368±1.09 3.547±3.19 0.411±0.15
ENSMUST00000166646 0.627±0.00 N/A N/A 0.949±0.00 N/A N/A N/A N/A 0.202±0.00 N/A 0.914±0.10 2.467±0.95 0.670±0.22 0.543±0.00
ENSMUSG00000058571 ENSMUST00000078849 3.469±0.61 1.919±0.60 13.079±1.56 2.854±1.64 3.898±1.33 1.340±0.16 1.747±0.65 1.892±0.37 1.143±1.00 0.903±0.36 N/A 3.859±2.55 1.094±0.52 0.160±0.07
ENSMUST00000088483 N/A N/A N/A N/A 1.629±0.10 0.656±0.20 N/A N/A N/A 0.449±0.00 N/A N/A 0.326±0.00 N/A
ENSMUST00000123239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125435 2.126±0.00 2.102±0.00 N/A N/A 1.500±0.00 0.455±0.06 N/A N/A N/A N/A N/A 0.906±0.00 N/A 0.160±0.07
ENSMUSG00000061517 ENSMUST00000170662 N/A 0.047±0.05 0.035±0.01 6.791±3.95 0.072±0.05 0.980±0.10 0.075±0.00 0.008±0.00 0.008±0.00 0.389±0.12 0.028±0.01 0.153±0.05 0.583±0.53 0.014±0.01
ENSMUSG00000090534 ENSMUST00000163396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.441±0.00 N/A 0.107±0.00
ENSMUST00000164755 N/A 0.093±0.04 0.010±0.00 2.662±0.66 0.121±0.05 1.017±0.21 0.056±0.01 N/A 0.009±0.00 0.291±0.06 0.023±0.00 0.154±0.09 0.055±0.04 N/A
ENSMUST00000169262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092109 ENSMUST00000171107 N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A 0.065±0.01
ENSMUSG00000096997 ENSMUST00000180942 N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A 0.211±0.18 N/A 0.563±0.12
ENSMUSG00000097358 ENSMUST00000180772 0.633±0.00 1.463±0.39 N/A N/A 0.635±0.18 0.422±0.00 0.304±0.01 0.492±0.00 N/A 0.574±0.00 0.126±0.00 1.013±0.38 N/A 0.257±0.04
ENSMUSG00000099911 ENSMUST00000186060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.929±0.57

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