C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NSFL1 (p97) cofactor (p47)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000088833 NSFL1C 9606 - 20:1442162-1473842 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216879 NSFL1C-002 1442162-1467692 protein_coding
  ENST00000353088 NSFL1C-004 1442162-1466828 protein_coding
  ENST00000381653 NSFL1C-003 1443735-1466824 nonsense_mediated_decay
  ENST00000461211 NSFL1C-006 1442162-1457090 processed_transcript
  ENST00000470376 NSFL1C-001 1452545-1466829 nonsense_mediated_decay
  ENST00000476071 NSFL1C-010 1442162-1466918 protein_coding
  ENST00000478168 NSFL1C-008 1463906-1466822 retained_intron
  ENST00000487086 NSFL1C-009 1458030-1466832 retained_intron
  ENST00000489203 NSFL1C-007 1454213-1466824 nonsense_mediated_decay
  ENST00000553571 NSFL1C-013 1453120-1473842 processed_transcript
  ENST00000555359 NSFL1C-011 1457955-1466849 retained_intron
  ENST00000555568 NSFL1C-012 1445666-1466835 nonsense_mediated_decay
  ENST00000555944 NSFL1C-005 1442162-1466905 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216879ENST00000381653ENST00000461211ENST00000470376ENST00000476071ENST00000489203ENST00000555568ENST00000555944
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216879 N/A N/A 0.478±0.00 N/A N/A N/A N/A N/A N/A 0.917±0.00 N/A 1.455±0.00 N/A N/A
ENST00000381653 N/A 7.110±0.00 0.998±0.00 8.274±0.00 6.403±0.00 7.321±0.00 N/A N/A 4.809±0.00 9.656±0.00 N/A 11.610±10.25 N/A 9.523±0.00
ENST00000461211 N/A N/A N/A N/A N/A 0.389±0.00 N/A N/A N/A 1.015±0.00 N/A 0.788±0.00 N/A N/A
ENST00000470376 N/A N/A N/A N/A N/A N/A 1.735±0.00 N/A 2.754±0.00 N/A N/A 3.935±0.00 N/A N/A
ENST00000476071 15.559±0.00 8.543±0.00 0.692±0.00 7.158±2.12 12.245±0.00 8.391±0.00 5.976±4.38 5.833±3.54 4.407±2.34 9.811±0.00 11.528±10.02 12.801±8.44 18.037±4.86 12.946±0.00
ENST00000489203 N/A N/A N/A N/A N/A N/A N/A N/A 4.111±0.00 N/A N/A N/A N/A N/A
ENST00000555568 36.951±0.00 18.970±0.00 N/A 17.537±14.36 13.288±9.04 12.033±10.42 17.677±0.00 27.616±0.00 13.837±0.00 11.375±8.06 21.394±14.97 55.366±31.77 54.878±20.86 47.525±15.72
ENST00000555944 N/A 4.795±0.00 N/A N/A N/A N/A N/A 2.883±0.00 N/A N/A N/A N/A N/A 9.182±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0008289 IEA lipid binding
GO:0045111 IDA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006375 nsfl1c NSFL1 (p97) cofactor (p47) protein_coding Danio_rerio
ENSDARG00000087640 nsfl1c NSFL1 (p97) cofactor (p47) protein_coding Danio_rerio
ENSMUSG00000027455 Nsfl1c NSFL1 (p97) cofactor (p47) protein_coding Mus_musculus

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