C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NSFL1 (p97) cofactor (p47)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000476071 NSFL1C-010 ENSG00000088833 9606 - 20:1442162-1466918 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000476071
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000476071 15.559±0.00 8.543±0.00 0.692±0.00 7.158±2.12 12.245±0.00 8.391±0.00 5.976±4.38 5.833±3.54 4.407±2.34 9.811±0.00 11.528±10.02 12.801±8.44 18.037±4.86 12.946±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0008289 IEA lipid binding
GO:0045111 IDA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089140 Nsfl1c-001 protein_coding Mus_musculus 0 1807
ENSMUST00000028949 Nsfl1c-002 protein_coding Mus_musculus 0 1744
ENSMUST00000120352 Gm5555-001 processed_pseudogene Mus_musculus 0 1328
ENSMUST00000153333 Nsfl1c-004 retained_intron Mus_musculus 0 1155
ENSMUST00000146695 Nsfl1c-005 retained_intron Mus_musculus 0 1064
ENSMUST00000103160 Nsfl1c-003 protein_coding Mus_musculus 0 976
ENSMUST00000134081 Nsfl1c-009 retained_intron Mus_musculus 0 671
ENSMUST00000139229 Nsfl1c-010 retained_intron Mus_musculus 0 616
ENSMUST00000133197 Nsfl1c-007 retained_intron Mus_musculus 0 616
ENSMUST00000125270 Nsfl1c-006 retained_intron Mus_musculus 0 396
ENSMUST00000156182 Nsfl1c-008 processed_transcript Mus_musculus 0 353

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