C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000089009 RPL6 9606 - 12:112405190-112418838 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000202773 RPL6-001 112405199-112409641 protein_coding
  ENST00000424576 RPL6-002 112405203-112409596 protein_coding
  ENST00000546368 RPL6-006 112406294-112409635 retained_intron
  ENST00000548343 RPL6-009 112408260-112408952 protein_coding
  ENST00000549562 RPL6-010 112408021-112409614 retained_intron
  ENST00000549847 RPL6-008 112406748-112409311 protein_coding
  ENST00000550238 RPL6-011 112406299-112410370 protein_coding
  ENST00000550566 RPL6-017 112406747-112409574 protein_coding
  ENST00000551041 RPL6-003 112406343-112409605 retained_intron
  ENST00000551291 RPL6-012 112406866-112418838 protein_coding
  ENST00000552455 RPL6-015 112406629-112409593 retained_intron
  ENST00000553205 RPL6-014 112405190-112406344 retained_intron
  ENST00000553213 RPL6-016 112406871-112409574 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000202773ENST00000424576ENST00000550238
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000202773 227.380±0.00 164.386±0.00 58.782±0.00 119.680±26.56 187.304±48.75 248.052±126.49 56.891±24.33 186.728±70.62 136.153±12.10 183.371±95.32 116.639±3.34 430.458±324.73 263.210±19.52 132.959±67.93
ENST00000424576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 44.717±0.00 N/A N/A
ENST00000550238 306.346±0.00 431.213±0.00 N/A N/A 334.984±0.00 444.124±0.00 N/A N/A N/A N/A N/A N/A N/A 277.324±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003677 TAS DNA binding
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058451 rpl6 ribosomal protein L6 protein_coding Danio_rerio
ENSMUSG00000029614 Rpl6 ribosomal protein L6 protein_coding Mus_musculus
ENSMUSG00000091086 Gm5428 predicted gene 5428 protein_coding Mus_musculus

Loading